Aliases for LINC02080 Gene

Subcategory (RNA class) for LINC02080 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02080 Gene

  • Long Intergenic Non-Protein Coding RNA 2080 2 3 5
  • LINC02080 2 170
  • NONHSAG022838 94

External Ids for LINC02080 Gene

Summaries for LINC02080 Gene

GeneCards Summary for LINC02080 Gene

LINC02080 (Long Intergenic Non-Protein Coding RNA 2080) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02080 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02080 Gene

Genomics for LINC02080 Gene

GeneHancer (GH) Regulatory Elements for LINC02080 Gene

Promoters and enhancers for LINC02080 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02080 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02080 Gene

Genomic Locations for LINC02080 Gene
chr17:76,799,044-76,823,054
(GRCh38/hg38)
Size:
24,011 bases
Orientation:
Plus strand
chr17:74,795,126-74,802,035
(GRCh37/hg19)
Size:
6,910 bases
Orientation:
Plus strand

Genomic View for LINC02080 Gene

Genes around LINC02080 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02080 Gene

Proteins for LINC02080 Gene

Post-translational modifications for LINC02080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02080 Gene

Domains & Families for LINC02080 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02080 Gene

Function for LINC02080 Gene

Phenotypes From GWAS Catalog for LINC02080 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02080 Gene

Localization for LINC02080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02080 Gene

Pathways & Interactions for LINC02080 Gene

PathCards logo

SuperPathways for LINC02080 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02080 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02080 Gene

Drugs & Compounds for LINC02080 Gene

No Compound Related Data Available

Transcripts for LINC02080 Gene

mRNA/cDNA for LINC02080 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02080 Gene

No ASD Table

Relevant External Links for LINC02080 Gene

GeneLoc Exon Structure for
LINC02080
ECgene alternative splicing isoforms for
LINC02080

Expression for LINC02080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02080 Gene

Orthologs for LINC02080 Gene

Evolution for LINC02080 Gene

ENSEMBL:
Gene Tree for LINC02080 (if available)
TreeFam:
Gene Tree for LINC02080 (if available)

No data available for Orthologs for LINC02080 Gene

Paralogs for LINC02080 Gene

No data available for Paralogs for LINC02080 Gene

Variants for LINC02080 Gene

Sequence variations from dbSNP and Humsavar for LINC02080 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000213558 -- 76,799,812(+) GGGG/GGG intron_variant
rs1000557596 -- 76,803,180(+) C/A intron_variant
rs1000860906 -- 76,797,500(+) G/T upstream_transcript_variant
rs1001350773 -- 76,807,326(+) T/G downstream_transcript_variant
rs1001730600 -- 76,800,435(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02080 Gene

Variant ID Type Subtype PubMed ID
nsv1059991 CNV loss 25217958
nsv833550 CNV loss 17160897

Additional Variant Information for LINC02080 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02080

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02080 Gene

Disorders for LINC02080 Gene

Additional Disease Information for LINC02080

No disorders were found for LINC02080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02080 Gene

Publications for LINC02080 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LINC02080 Gene

Sources for LINC02080 Gene