Aliases for LINC02079 Gene

Subcategory (RNA class) for LINC02079 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02079 Gene

  • Long Intergenic Non-Protein Coding RNA 2079 2 3 5
  • LINC02079 2 5 165
  • NONHSAG021682.2 91
  • HSALNG0116212 164
  • CTD-2206N4.2 3

External Ids for LINC02079 Gene

Summaries for LINC02079 Gene

GeneCards Summary for LINC02079 Gene

LINC02079 (Long Intergenic Non-Protein Coding RNA 2079) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02079 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02079 Gene

Genomics for LINC02079 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02079 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J039027 Promoter 0.9 Ensembl 600.7 -0.3 -290 1.2 PRDM10 ZNF692 FOXA1 PATZ1 ZNF501 ZNF600 SCRT2 SP2 RFX1 ZBTB10 ENSG00000266588 LRRC37A11P LINC02079 LOC105371767 piR-50444-177 PLXDC1 PGAP3 STARD3 CDK12 LOC105371762
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02079 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02079 Gene

Genomic Locations for LINC02079 Gene
chr17:39,026,715-39,027,110
(GRCh38/hg38)
Size:
396 bases
Orientation:
Minus strand
chr17:37,182,968-37,183,363
(GRCh37/hg19)
Size:
396 bases
Orientation:
Minus strand

Genomic View for LINC02079 Gene

Genes around LINC02079 on UCSC Golden Path with GeneCards custom track
LINC02079 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02079 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02079 Gene

Proteins for LINC02079 Gene

Post-translational modifications for LINC02079 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02079 Gene

Domains & Families for LINC02079 Gene

Gene Families for LINC02079 Gene

genes like me logo Genes that share domains with LINC02079: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02079 Gene

Function for LINC02079 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02079 Gene

Localization for LINC02079 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02079 Gene

Pathways & Interactions for LINC02079 Gene

PathCards logo

SuperPathways for LINC02079 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02079 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02079 Gene

Drugs & Compounds for LINC02079 Gene

No Compound Related Data Available

Transcripts for LINC02079 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02079 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F3A71_9606 lncRNA 294 4

Ensembl: ENST00000582518 (view in UCSC) ,

LncBook: HSALNT0240267,

LNCipedia: LINC02079:3,

NONCODE: NONHSAT053395.2,

URS0000A771B6_9606 lncRNA 294 2

HGNC: 52927,

RefSeq: NR_135645,

LINC02079 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02079 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02079 Gene

No ASD Table

Relevant External Links for LINC02079 Gene

GeneLoc Exon Structure for
LINC02079

Expression for LINC02079 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02079 Gene

Orthologs for LINC02079 Gene

Evolution for LINC02079 Gene

ENSEMBL:
Gene Tree for LINC02079 (if available)
TreeFam:
Gene Tree for LINC02079 (if available)

No data available for Orthologs for LINC02079 Gene

Paralogs for LINC02079 Gene

No data available for Paralogs for LINC02079 Gene

Variants for LINC02079 Gene

Additional dbSNP identifiers (rs#s) for LINC02079 Gene

Additional Variant Information for LINC02079 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02079

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02079 Gene

Disorders for LINC02079 Gene

Additional Disease Information for LINC02079

No disorders were found for LINC02079 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02079 Gene

Publications for LINC02079 Gene

No publications were found for LINC02079 Gene.

No data available for Mastermind for LINC02079 Gene

Products for LINC02079 Gene

Sources for LINC02079 Gene