Aliases for LINC02075 Gene

Data sources for LINC02075 Gene:

RNA type for LINC02075 Gene

lncRNA

Aliases for LINC02075 Gene

External Ids for LINC02075 Gene

Summaries for LINC02075 Gene

GeneCards Summary for LINC02075 Gene

LINC02075 (Long Intergenic Non-Protein Coding RNA 2075) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02075 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02075 Gene

Genomics for LINC02075 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02075 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049482 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 -23.4 -23352 5.8 NCOR1 ZNF600 JUND ZIC2 POLR2A MAFF TAL1 ZNF316 GABPB1 ESRRA LOC100288866 NXPH3 NGFR CALCOCO2 lnc-PHB-2 LINC02075 PHB
GH17J049459 Enhancer 0.5 Ensembl 0.7 +2.0 2048 1.4 TEAD3 BCL6 EGR2 CTCF ZFHX2 HSALNG0117182 PHB ENSG00000207127 NGFR RPL21P124 ENSG00000250186 LINC02075 ENSG00000262039
GH17J049469 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 -9.5 -9500 1.6 NFIC ZIC2 ZFP36 GATA2 KLF1 CHD2 NGFR PHB ENSG00000250186 RPL21P124 DLX3 ENSG00000248172 LINC02075 lnc-PHB-2 ENSG00000262039
GH17J049457 Enhancer 0.4 Ensembl 0.7 +3.6 3648 0.6 ZNF623 EGR2 KDM1A HSALNG0117182 PHB ENSG00000207127 NGFR ENSG00000250186 RPL21P124 HSALNG0117181 LINC02075 ENSG00000262039
GH17J049465 Enhancer 0.3 Ensembl 0.7 -4.2 -4152 1 PRDM10 NGFR PHB ENSG00000250186 RPL21P124 ITGA3 LINC02075 lnc-PHB-2 ENSG00000262039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02075 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02075 Gene

Latest Assembly
chr17:49,457,860-49,461,749
(GRCh38/hg38)
Size:
3,890 bases
Orientation:
Minus strand

Previous Assembly
chr17:47,535,223-47,539,111
(GRCh37/hg19 by Entrez Gene)
Size:
3,889 bases
Orientation:
Minus strand

chr17:47,535,223-47,539,111
(GRCh37/hg19 by Ensembl)
Size:
3,889 bases
Orientation:
Minus strand

Genomic View for LINC02075 Gene

Genes around LINC02075 on UCSC Golden Path with GeneCards custom track
LINC02075 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02075 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02075 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02075 Gene

Proteins for LINC02075 Gene

Post-translational modifications for LINC02075 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02075 Gene

Domains & Families for LINC02075 Gene

Gene Families for LINC02075 Gene

genes like me logo Genes that share domains with LINC02075: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02075 Gene

Function for LINC02075 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02075 Gene

Localization for LINC02075 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02075 Gene

Pathways & Interactions for LINC02075 Gene

PathCards logo

SuperPathways for LINC02075 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02075 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02075 Gene

Drugs & Compounds for LINC02075 Gene

No Compound Related Data Available

Transcripts for LINC02075 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02075 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000363D03_9606 lncRNA 1754 4

RefSeq: NR_110805,

Ensembl: ENST00000509950 (view in UCSC) ,

LNCipedia: LINC02075:3,

NONCODE: NONHSAT054540.2,

LINC02075 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02075 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02075 Gene

No ASD Table

Relevant External Links for LINC02075 Gene

GeneLoc Exon Structure for
LINC02075

Expression for LINC02075 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02075 Gene

Orthologs for LINC02075 Gene

Evolution for LINC02075 Gene

ENSEMBL:
Gene Tree for LINC02075 (if available)
TreeFam:
Gene Tree for LINC02075 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02075

No data available for Orthologs for LINC02075 Gene

Paralogs for LINC02075 Gene

No data available for Paralogs for LINC02075 Gene

Variants for LINC02075 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02075 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02075 Gene

Variant ID Type Subtype PubMed ID
nsv833473 CNV gain+loss 17160897

Additional Variant Information for LINC02075 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02075
Leiden Open Variation Database (LOVD)
LINC02075

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02075 Gene

Disorders for LINC02075 Gene

Additional Disease Information for LINC02075

No disorders were found for LINC02075 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02075 Gene

Publications for LINC02075 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02075 Gene

Products for LINC02075 Gene

Sources for LINC02075 Gene