Aliases for LINC02073 Gene

Data sources for LINC02073 Gene:

RNA type for LINC02073 Gene

lncRNA

Aliases for LINC02073 Gene

External Ids for LINC02073 Gene

Previous GeneCards Identifiers for LINC02073 Gene

  • GC17P051338
  • GC17P051340
  • GC17P051437
  • GC17P051343
  • GC17P051346

Summaries for LINC02073 Gene

GeneCards Summary for LINC02073 Gene

LINC02073 (Long Intergenic Non-Protein Coding RNA 2073) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02073 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02073 Gene

Genomics for LINC02073 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02073 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J051434 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE 250.2 +98.7 98715 2.1 ZNF600 CEBPA ZNF223 ZIC2 YY1 MXD4 FOXA1 KLF11 HOMEZ CTCF LINC02073 HSALNG0117381 piR-60885-043 HSALNG0117380 LINC02072 UTP18 CA10
GH17J051335 Promoter/Enhancer 0.5 EPDnew dbSUPER 250.7 +0.1 50 0.1 ENSG00000249658 LINC02071 LINC02072 LINC02073 UTP18 RF01045-055 CA10
GH17J051346 Enhancer 1 Ensembl dbSUPER 0.4 +10.0 9955 0.4 SSRP1 ZMYM3 CEBPA THAP11 FOXA2 SMAD4 ZNF511 SAP130 ETV4 MIER3 LINC02072 LINC02073 RF01045-055 UTP18 CA10
GH17J051363 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +27.4 27355 3.6 ELF1 JUND EHMT2 NR2F6 ATF2 ARID1B CREM CREB1 NR2C1 GABPB1 HSALNG0117377 RF01045-055 UTP18 NME2 NME1 LINC02072 LINC02073 CA10
GH17J051371 Enhancer 1 ENCODE dbSUPER 0.3 +36.6 36584 2.9 ZNF654 MYC SIX5 REST MBD2 MNT CTCF ZNF217 THAP11 GABPA HSALNG0117378-001 HSALNG0117378-002 HSALNG0117379 lnc-MBTD1-6 NME1 piR-48965-055 LINC02072 LINC02073 UTP18 CA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02073 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02073 Gene

Latest Assembly
chr17:51,336,646-51,521,401
(GRCh38/hg38)
Size:
184,756 bases
Orientation:
Plus strand

Previous Assembly
chr17:49,512,788-49,523,163
(GRCh37/hg19 by Entrez Gene)
Size:
10,376 bases
Orientation:
Plus strand

Genomic View for LINC02073 Gene

Genes around LINC02073 on UCSC Golden Path with GeneCards custom track
LINC02073 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02073 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02073 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02073 Gene

Proteins for LINC02073 Gene

Post-translational modifications for LINC02073 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02073 Gene

Domains & Families for LINC02073 Gene

Gene Families for LINC02073 Gene

genes like me logo Genes that share domains with LINC02073: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02073 Gene

Function for LINC02073 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02073 Gene

Localization for LINC02073 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02073 Gene

Pathways & Interactions for LINC02073 Gene

PathCards logo

SuperPathways for LINC02073 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02073 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02073 Gene

Drugs & Compounds for LINC02073 Gene

No Compound Related Data Available

Transcripts for LINC02073 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02073 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000611924_9606 lncRNA 2847 3

Ensembl: ENST00000588341 (view in UCSC) ,

LNCipedia: LINC02073:5,

NONCODE: NONHSAT054759.2,

URS0000DBB5AF_9606 lncRNA 3991 1

Ensembl: ENST00000650413 (view in UCSC) ,

URS0000EF1EE3_9606 lncRNA 2992 1

Ensembl: ENST00000662469 (view in UCSC) ,

URS0000EF5CF3_9606 lncRNA 2714 1

Ensembl: ENST00000441895 (view in UCSC) ,

URS0000BC455F_9606 lncRNA 2535 1

RefSeq: NR_146897,

LINC02073 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02073 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02073 Gene

No ASD Table

Relevant External Links for LINC02073 Gene

GeneLoc Exon Structure for
LINC02073

Expression for LINC02073 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02073 Gene

Orthologs for LINC02073 Gene

Evolution for LINC02073 Gene

ENSEMBL:
Gene Tree for LINC02073 (if available)
TreeFam:
Gene Tree for LINC02073 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02073

No data available for Orthologs for LINC02073 Gene

Paralogs for LINC02073 Gene

No data available for Paralogs for LINC02073 Gene

Variants for LINC02073 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02073 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02073 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02073
Leiden Open Variation Database (LOVD)
LINC02073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02073 Gene

Disorders for LINC02073 Gene

Additional Disease Information for LINC02073

No disorders were found for LINC02073 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02073 Gene

Publications for LINC02073 Gene

No publications were found for LINC02073 Gene.

No data available for Mastermind for LINC02073 Gene

Products for LINC02073 Gene

Sources for LINC02073 Gene