Aliases for LINC02072 Gene

Subcategory (RNA class) for LINC02072 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02072 Gene

  • Long Intergenic Non-Protein Coding RNA 2072 2 3
  • LINC02073 5 168
  • LINC02072 2 168
  • Long Intergenic Non-Protein Coding RNA 2073 5
  • NONHSAG022230 92
  • NONHSAG022231 92
  • HSALNG0117380 167

External Ids for LINC02072 Gene

Previous GeneCards Identifiers for LINC02072 Gene

  • GC17P051337

Summaries for LINC02072 Gene

GeneCards Summary for LINC02072 Gene

LINC02072 (Long Intergenic Non-Protein Coding RNA 2072) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02072 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02072 Gene

Genomics for LINC02072 Gene

GeneHancer (GH) Regulatory Elements for LINC02072 Gene

Promoters and enhancers for LINC02072 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J051335 Enhancer 0.6 dbSUPER 500.7 +0.2 221 3.6 FOSL1 TAL1 MNT KLF17 TCF12 KLF1 ID3 USF2 TEAD4 GATA1 ENSG00000249658 LINC02071 LINC02072 LINC02073 UTP18 NME2 RF01045-056
GH17J051346 Enhancer 1 Ensembl dbSUPER 0.4 +10.0 9955 0.4 ZBTB25 TEAD1 FOXA2 SAP130 ZNF205 MIER3 CREM FOXP1 SMAD4 ZNF511 LINC02072 LINC02073 RF01045-056
GH17J051363 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +27.4 27355 3.6 CTBP1 CREB3L1 GABPA FOSL1 EHMT2 NR2F1 ELF1 ZNF584 VEZF1 NR2F6 RF01045-056 UTP18 NME2 NME1 LINC02072 LINC02073
GH17J051371 Enhancer 1.1 ENCODE dbSUPER 0.3 +36.6 36584 2.9 ZBTB40 ZNF217 CTCF USF1 TEAD4 SIX5 ZBTB11 REST USF2 MYC lnc-MBTD1-6 NME1 piR-48965-055 LINC02072 LINC02073
GH17J051354 Enhancer 0.7 Ensembl dbSUPER 0.4 +19.0 18963 0.8 JUND MXI1 SPI1 USF1 RCOR1 CHD2 YY1 GATA2 PRDM10 RAD21 UTP18 RF01045-056 LINC02072 LINC02073
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02072 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02072 Gene

Genomic Locations for LINC02072 Gene
chr17:51,336,646-51,521,401
(GRCh38/hg38)
Size:
184,756 bases
Orientation:
Plus strand
chr17:49,414,076-49,419,932
(GRCh37/hg19)
Size:
5,857 bases
Orientation:
Plus strand

Genomic View for LINC02072 Gene

Genes around LINC02072 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02072 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02072 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02072 Gene

Proteins for LINC02072 Gene

Post-translational modifications for LINC02072 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02072 Gene

Domains & Families for LINC02072 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02072 Gene

Function for LINC02072 Gene

Phenotypes for LINC02072 Gene

GenomeRNAi human phenotypes for LINC02072:
genes like me logo Genes that share phenotypes with LINC02072: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02072 Gene

Localization for LINC02072 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02072 Gene

Pathways & Interactions for LINC02072 Gene

PathCards logo

SuperPathways for LINC02072 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02072 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02072 Gene

Drugs & Compounds for LINC02072 Gene

No Compound Related Data Available

Transcripts for LINC02072 Gene

mRNA/cDNA for LINC02072 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02072 Gene

No ASD Table

Relevant External Links for LINC02072 Gene

GeneLoc Exon Structure for
LINC02072

Expression for LINC02072 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02072

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02072 Gene

Orthologs for LINC02072 Gene

Evolution for LINC02072 Gene

ENSEMBL:
Gene Tree for LINC02072 (if available)
TreeFam:
Gene Tree for LINC02072 (if available)

No data available for Orthologs for LINC02072 Gene

Paralogs for LINC02072 Gene

No data available for Paralogs for LINC02072 Gene

Variants for LINC02072 Gene

Additional dbSNP identifiers (rs#s) for LINC02072 Gene

Additional Variant Information for LINC02072 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02072

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02072 Gene

Disorders for LINC02072 Gene

Additional Disease Information for LINC02072

No disorders were found for LINC02072 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02072 Gene

Publications for LINC02072 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC02072 Gene

Sources for LINC02072 Gene