Aliases for LINC02072 Gene

Data sources for LINC02072 Gene:

RNA type for LINC02072 Gene

lncRNA

Aliases for LINC02072 Gene

External Ids for LINC02072 Gene

Previous GeneCards Identifiers for LINC02072 Gene

  • GC17P051337
  • GC17P051339
  • GC17P051342
  • GC17P051345

Summaries for LINC02072 Gene

GeneCards Summary for LINC02072 Gene

LINC02072 (Long Intergenic Non-Protein Coding RNA 2072) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02072 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02072 Gene

Genomics for LINC02072 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02072 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J051335 Promoter/Enhancer 0.5 EPDnew dbSUPER 250.7 +0.1 50 0.1 ENSG00000249658 LINC02071 LINC02072 LINC02073 UTP18 RF01045-055 CA10
GH17J051346 Enhancer 1 Ensembl dbSUPER 0.4 +10.0 9955 0.4 SSRP1 ZMYM3 CEBPA THAP11 FOXA2 SMAD4 ZNF511 SAP130 ETV4 MIER3 LINC02072 LINC02073 RF01045-055 UTP18 CA10
GH17J051363 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +27.4 27355 3.6 ELF1 JUND EHMT2 NR2F6 ATF2 ARID1B CREM CREB1 NR2C1 GABPB1 HSALNG0117377 RF01045-055 UTP18 NME2 NME1 LINC02072 LINC02073 CA10
GH17J051371 Enhancer 1 ENCODE dbSUPER 0.3 +36.6 36584 2.9 ZNF654 MYC SIX5 REST MBD2 MNT CTCF ZNF217 THAP11 GABPA HSALNG0117378-001 HSALNG0117378-002 HSALNG0117379 lnc-MBTD1-6 NME1 piR-48965-055 LINC02072 LINC02073 UTP18 CA10
GH17J051434 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE 0.2 +98.7 98715 2.1 ZNF600 CEBPA ZNF223 ZIC2 YY1 MXD4 FOXA1 KLF11 HOMEZ CTCF LINC02073 HSALNG0117381 piR-60885-043 HSALNG0117380 LINC02072 UTP18 CA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02072 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02072 Gene

Latest Assembly
chr17:51,336,646-51,521,401
(GRCh38/hg38)
Size:
184,756 bases
Orientation:
Plus strand

Previous Assembly
chr17:49,414,076-49,419,932
(GRCh37/hg19 by Entrez Gene)
Size:
5,857 bases
Orientation:
Plus strand

Genomic View for LINC02072 Gene

Genes around LINC02072 on UCSC Golden Path with GeneCards custom track
LINC02072 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02072 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02072 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02072 Gene

Proteins for LINC02072 Gene

Post-translational modifications for LINC02072 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02072 Gene

Domains & Families for LINC02072 Gene

Gene Families for LINC02072 Gene

genes like me logo Genes that share domains with LINC02072: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02072 Gene

Function for LINC02072 Gene

Phenotypes for LINC02072 Gene

GenomeRNAi human phenotypes for LINC02072:
genes like me logo Genes that share phenotypes with LINC02072: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02072 Gene

Localization for LINC02072 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02072 Gene

Pathways & Interactions for LINC02072 Gene

PathCards logo

SuperPathways for LINC02072 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02072 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02072 Gene

Drugs & Compounds for LINC02072 Gene

No Compound Related Data Available

Transcripts for LINC02072 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02072 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000611924_9606 lncRNA 2847 3

Ensembl: ENST00000588341 (view in UCSC) ,

LNCipedia: LINC02073:5,

NONCODE: NONHSAT054759.2,

URS00005E845C_9606 lncRNA 2648 3

RefSeq: NR_122104,

LNCipedia: LINC02072:3,

NONCODE: NONHSAT054757.2,

URS0000DBB5AF_9606 lncRNA 3991 1

Ensembl: ENST00000650413 (view in UCSC) ,

URS0000EF1EE3_9606 lncRNA 2992 1

Ensembl: ENST00000662469 (view in UCSC) ,

URS0000EF5CF3_9606 lncRNA 2714 1

Ensembl: ENST00000441895 (view in UCSC) ,

LINC02072 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02072 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02072 Gene

No ASD Table

Relevant External Links for LINC02072 Gene

GeneLoc Exon Structure for
LINC02072

Expression for LINC02072 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02072

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02072 Gene

Orthologs for LINC02072 Gene

Evolution for LINC02072 Gene

ENSEMBL:
Gene Tree for LINC02072 (if available)
TreeFam:
Gene Tree for LINC02072 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02072

No data available for Orthologs for LINC02072 Gene

Paralogs for LINC02072 Gene

No data available for Paralogs for LINC02072 Gene

Variants for LINC02072 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02072 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02072 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02072
Leiden Open Variation Database (LOVD)
LINC02072

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02072 Gene

Disorders for LINC02072 Gene

Additional Disease Information for LINC02072

No disorders were found for LINC02072 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02072 Gene

Publications for LINC02072 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC02072 Gene

Sources for LINC02072 Gene