Aliases for LINC02071 Gene

Data sources for LINC02071 Gene:

RNA type for LINC02071 Gene

lncRNA

Aliases for LINC02071 Gene

External Ids for LINC02071 Gene

Summaries for LINC02071 Gene

GeneCards Summary for LINC02071 Gene

LINC02071 (Long Intergenic Non-Protein Coding RNA 2071) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02071 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02071 Gene

Genomics for LINC02071 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02071 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J051335 Promoter/Enhancer 0.5 EPDnew dbSUPER 250.7 -1.5 -1531 0.1 ENSG00000249658 LINC02071 LINC02072 LINC02073 UTP18 RF01045-055 CA10
GH17J051322 Enhancer 0.9 Ensembl ENCODE 0.4 +12.7 12664 0.2 ZNF654 REST TRIM22 CTCF FOXA2 RAD21 SMC3 DRAP1 MLLT1 PKNOX1 HSALNG0117373 piR-33432-230 HSALNG0117374 LINC02071 UTP18 CA10
GH17J051332 Promoter 0.5 Ensembl 0.7 +2.3 2265 0.6 FOXA2 KLF1 ENSG00000249982 HSALNG0117374 piR-45012-235 piR-49423-106 piR-59297-277 piR-57176-270 UTP18 NME2 LINC02071 CA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02071 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02071 Gene

Latest Assembly
chr17:51,312,608-51,335,165
(GRCh38/hg38)
Size:
22,558 bases
Orientation:
Minus strand

Previous Assembly
chr17:49,389,970-49,412,523
(GRCh37/hg19 by Entrez Gene)
Size:
22,554 bases
Orientation:
Minus strand

chr17:49,389,970-49,412,526
(GRCh37/hg19 by Ensembl)
Size:
22,557 bases
Orientation:
Minus strand

Genomic View for LINC02071 Gene

Genes around LINC02071 on UCSC Golden Path with GeneCards custom track
LINC02071 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02071 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02071 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02071 Gene

Proteins for LINC02071 Gene

Post-translational modifications for LINC02071 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02071 Gene

Domains & Families for LINC02071 Gene

Gene Families for LINC02071 Gene

genes like me logo Genes that share domains with LINC02071: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02071 Gene

Function for LINC02071 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02071 Gene

Localization for LINC02071 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02071 Gene

Pathways & Interactions for LINC02071 Gene

PathCards logo

SuperPathways for LINC02071 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02071 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02071 Gene

Drugs & Compounds for LINC02071 Gene

No Compound Related Data Available

Transcripts for LINC02071 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02071 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000E19E6_9606 lncRNA 1723 3

Ensembl: ENST00000514726 (view in UCSC) ,

LNCipedia: LINC02071:4,

NONCODE: NONHSAT054753.2,

URS000075C28C_9606 lncRNA 1720 1

RefSeq: NR_110751,

URS0000DB8F8B_9606 lncRNA 1149 1

Ensembl: ENST00000649531 (view in UCSC) ,

URS0000D5AF7A_9606 lncRNA 1720 1

LNCipedia: LINC02071:5,

LINC02071 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02071 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02071 Gene

No ASD Table

Relevant External Links for LINC02071 Gene

GeneLoc Exon Structure for
LINC02071

Expression for LINC02071 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02071

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02071 Gene

Orthologs for LINC02071 Gene

Evolution for LINC02071 Gene

ENSEMBL:
Gene Tree for LINC02071 (if available)
TreeFam:
Gene Tree for LINC02071 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02071

No data available for Orthologs for LINC02071 Gene

Paralogs for LINC02071 Gene

No data available for Paralogs for LINC02071 Gene

Variants for LINC02071 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02071 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02071 Gene

Variant ID Type Subtype PubMed ID
esv2672335 CNV deletion 23128226
esv3640761 CNV gain 21293372
esv3640762 CNV loss 21293372

Additional Variant Information for LINC02071 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02071
Leiden Open Variation Database (LOVD)
LINC02071

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02071 Gene

Disorders for LINC02071 Gene

Additional Disease Information for LINC02071

No disorders were found for LINC02071 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02071 Gene

Publications for LINC02071 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02071 Gene

Products for LINC02071 Gene

Sources for LINC02071 Gene