Aliases for LINC02054 Gene

Subcategory (RNA class) for LINC02054 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02054 Gene

  • Long Intergenic Non-Protein Coding RNA 2054 2 3 5
  • NONHSAG036864 92
  • HSALNG0031246 167
  • Lnc-CHRD-10 168

External Ids for LINC02054 Gene

Summaries for LINC02054 Gene

GeneCards Summary for LINC02054 Gene

LINC02054 (Long Intergenic Non-Protein Coding RNA 2054) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02054 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02054 Gene

Genomics for LINC02054 Gene

GeneHancer (GH) Regulatory Elements for LINC02054 Gene

Promoters and enhancers for LINC02054 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02054 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02054

Genomic Locations for LINC02054 Gene

Genomic Locations for LINC02054 Gene
chr3:184,395,351-184,457,891
(GRCh38/hg38)
Size:
62,541 bases
Orientation:
Plus strand
chr3:184,119,325-184,157,436
(GRCh37/hg19)
Size:
38,112 bases
Orientation:
Plus strand

Genomic View for LINC02054 Gene

Genes around LINC02054 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02054 Gene

Proteins for LINC02054 Gene

Post-translational modifications for LINC02054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02054 Gene

Domains & Families for LINC02054 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02054 Gene

Function for LINC02054 Gene

Phenotypes From GWAS Catalog for LINC02054 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02054 Gene

Localization for LINC02054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02054 Gene

Pathways & Interactions for LINC02054 Gene

PathCards logo

SuperPathways for LINC02054 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02054 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02054 Gene

Drugs & Compounds for LINC02054 Gene

No Compound Related Data Available

Transcripts for LINC02054 Gene

mRNA/cDNA for LINC02054 Gene

9 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
1 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02054 Gene

No ASD Table

Relevant External Links for LINC02054 Gene

GeneLoc Exon Structure for
LINC02054

Expression for LINC02054 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02054 Gene

Orthologs for LINC02054 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02054 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 99 (a)
OneToOne
Species where no ortholog for LINC02054 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC02054 Gene

ENSEMBL:
Gene Tree for LINC02054 (if available)
TreeFam:
Gene Tree for LINC02054 (if available)

Paralogs for LINC02054 Gene

No data available for Paralogs for LINC02054 Gene

Variants for LINC02054 Gene

Additional dbSNP identifiers (rs#s) for LINC02054 Gene

Additional Variant Information for LINC02054 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02054

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02054 Gene

Disorders for LINC02054 Gene

Additional Disease Information for LINC02054

No disorders were found for LINC02054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02054 Gene

Publications for LINC02054 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for LINC02054 Gene

Sources for LINC02054 Gene