Aliases for LINC02052 Gene

Subcategory (RNA class) for LINC02052 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02052 Gene

  • Long Intergenic Non-Protein Coding RNA 2052 2 3 5
  • LINC02052 2 168
  • HSALNG0031373 167
  • NONHSAG036906 92

External Ids for LINC02052 Gene

Summaries for LINC02052 Gene

GeneCards Summary for LINC02052 Gene

LINC02052 (Long Intergenic Non-Protein Coding RNA 2052) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02052 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02052 Gene

Genomics for LINC02052 Gene

GeneHancer (GH) Regulatory Elements for LINC02052 Gene

Promoters and enhancers for LINC02052 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J186492 Enhancer 0.6 Ensembl 500.7 -0.8 -762 4.4 RFX1 NR2F2 POLR2A NR2F1 RXRA SMARCA4 ID3 ZFX EGR2 NR2C1 LINC02052 lnc-DNAJB11-1 CRYGS
GH03J186453 Enhancer 0.6 Ensembl ENCODE 8.9 +41.2 41206 0.9 ZIC2 FOS NR3C1 EZH2 ZNF335 LINC02020 LINC02052 piR-45035-138 LINC02051
GH03J186455 Enhancer 0.4 Ensembl 10.9 +38.0 38038 1.2 EZH2 SMARCA4 ESR1 LINC02052 piR-45035-138 LINC02020 LINC02051
GH03J186406 Enhancer 0.8 VISTA Ensembl ENCODE 5.1 +86.9 86913 1.7 NR2F2 RAD21 RXRA SP1 LINC02052 RF00017-4201 DGKG
GH03J186401 Enhancer 0.3 Ensembl 4.9 +92.5 92539 1.8 ZSCAN5C LINC02052 RF00017-4201 DGKG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02052 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02052 Gene

Genomic Locations for LINC02052 Gene
chr3:186,448,053-186,493,839
(GRCh38/hg38)
Size:
45,787 bases
Orientation:
Minus strand
chr3:186,172,770-186,211,450
(GRCh37/hg19)
Size:
38,681 bases
Orientation:
Minus strand

Genomic View for LINC02052 Gene

Genes around LINC02052 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02052 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02052 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02052 Gene

Proteins for LINC02052 Gene

Post-translational modifications for LINC02052 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02052 Gene

Domains & Families for LINC02052 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02052 Gene

Function for LINC02052 Gene

Phenotypes From GWAS Catalog for LINC02052 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02052 Gene

Localization for LINC02052 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02052 Gene

Pathways & Interactions for LINC02052 Gene

PathCards logo

SuperPathways for LINC02052 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02052 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02052 Gene

Drugs & Compounds for LINC02052 Gene

No Compound Related Data Available

Transcripts for LINC02052 Gene

mRNA/cDNA for LINC02052 Gene

27 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
15 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
9 NONCODE transcripts :
8 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02052 Gene

No ASD Table

Relevant External Links for LINC02052 Gene

GeneLoc Exon Structure for
LINC02052

Expression for LINC02052 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02052

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02052 Gene

Orthologs for LINC02052 Gene

Evolution for LINC02052 Gene

ENSEMBL:
Gene Tree for LINC02052 (if available)
TreeFam:
Gene Tree for LINC02052 (if available)

No data available for Orthologs for LINC02052 Gene

Paralogs for LINC02052 Gene

No data available for Paralogs for LINC02052 Gene

Variants for LINC02052 Gene

Additional dbSNP identifiers (rs#s) for LINC02052 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02052 Gene

Variant ID Type Subtype PubMed ID
esv1981586 CNV deletion 18987734
esv23127 CNV loss 19812545
esv2549803 CNV deletion 19546169
esv2674178 CNV deletion 23128226
esv3598989 CNV loss 21293372
esv3893838 CNV gain 25118596
nsv4152 CNV insertion 18451855
nsv461036 CNV loss 19166990
nsv592706 CNV loss 21841781

Additional Variant Information for LINC02052 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02052

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02052 Gene

Disorders for LINC02052 Gene

Additional Disease Information for LINC02052

No disorders were found for LINC02052 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02052 Gene

Publications for LINC02052 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC02052 Gene

Sources for LINC02052 Gene