Aliases for LINC02046 Gene

Subcategory (RNA class) for LINC02046 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02046 Gene

  • Long Intergenic Non-Protein Coding RNA 2046 2 3 5
  • LINC02046 2 168
  • HSALNG0029683 167
  • NONHSAG036331 92

External Ids for LINC02046 Gene

Summaries for LINC02046 Gene

GeneCards Summary for LINC02046 Gene

LINC02046 (Long Intergenic Non-Protein Coding RNA 2046) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02046 include Endometrial Cancer.

Additional gene information for LINC02046 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02046 Gene

Genomics for LINC02046 Gene

GeneHancer (GH) Regulatory Elements for LINC02046 Gene

Promoters and enhancers for LINC02046 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J148288 Enhancer 0.9 VISTA UCNEbase 0.4 +9.7 9686 1.3 WT1 CTBP1 PKNOX1 ARNT LINC02046 piR-39082-005 piR-58929-069
GH03J148318 Enhancer 0.8 ENCODE 0.3 +40.0 39988 1.4 SP1 JUND FOS EP300 RELA MEF2C RCOR1 TRIM22 BCL11A TCF12 piR-58929-069 LOC105374148 piR-39082-005 LINC02046
GH03J148256 Enhancer 0.7 Ensembl 0.4 -23.3 -23281 0.8 NCOR1 TEAD1 TBX3 ZNF205 EHMT2 HNF4A KDM1A HMG20A NFIL3 TEAD3 LINC02045 LINC02046 HNRNPA1P20
GH03J148211 Enhancer 0.9 Ensembl ENCODE 0.2 -67.4 -67382 1.7 NCOR1 EP300 ZBTB26 USF1 BATF SMAD4 IKZF1 BMI1 NR2F1 NFATC3 LINC02045 LINC02032 HNRNPA1P20 ENSG00000244650 LINC02046
GH03J148331 Enhancer 0.6 UCNEbase Ensembl 0.2 +51.2 51218 2.6 PKNOX1 piR-58929-069 LOC105374148 piR-39082-005 LINC02046
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02046 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02046 Gene

Genomic Locations for LINC02046 Gene
chr3:148,279,682-148,401,084
(GRCh38/hg38)
Size:
121,403 bases
Orientation:
Plus strand
chr3:147,998,678-148,117,743
(GRCh37/hg19)
Size:
119,066 bases
Orientation:
Plus strand

Genomic View for LINC02046 Gene

Genes around LINC02046 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02046 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02046 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02046 Gene

Proteins for LINC02046 Gene

Post-translational modifications for LINC02046 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02046 Gene

Domains & Families for LINC02046 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02046 Gene

Function for LINC02046 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02046 Gene

Localization for LINC02046 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02046 Gene

Pathways & Interactions for LINC02046 Gene

PathCards logo

SuperPathways for LINC02046 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02046 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02046 Gene

Drugs & Compounds for LINC02046 Gene

No Compound Related Data Available

Transcripts for LINC02046 Gene

mRNA/cDNA for LINC02046 Gene

16 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
13 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02046 Gene

No ASD Table

Relevant External Links for LINC02046 Gene

GeneLoc Exon Structure for
LINC02046

Expression for LINC02046 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02046 Gene

Orthologs for LINC02046 Gene

Evolution for LINC02046 Gene

ENSEMBL:
Gene Tree for LINC02046 (if available)
TreeFam:
Gene Tree for LINC02046 (if available)

No data available for Orthologs for LINC02046 Gene

Paralogs for LINC02046 Gene

No data available for Paralogs for LINC02046 Gene

Variants for LINC02046 Gene

Additional dbSNP identifiers (rs#s) for LINC02046 Gene

Additional Variant Information for LINC02046 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02046

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02046 Gene

Disorders for LINC02046 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02046 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
endometrial cancer
  • endometrial cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02046

genes like me logo Genes that share disorders with LINC02046: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02046 Gene

Publications for LINC02046 Gene

No publications were found for LINC02046 Gene.

No data available for Mastermind for LINC02046 Gene

Products for LINC02046 Gene

Sources for LINC02046 Gene