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Aliases for LINC02042 Gene

Subcategory (RNA class) for LINC02042 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02042 Gene

  • Long Intergenic Non-Protein Coding RNA 2042 2 3 5

External Ids for LINC02042 Gene

Summaries for LINC02042 Gene

GeneCards Summary for LINC02042 Gene

LINC02042 (Long Intergenic Non-Protein Coding RNA 2042) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02042 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02042 Gene

Genomics for LINC02042 Gene

GeneHancer (GH) Regulatory Elements for LINC02042 Gene

Promoters and enhancers for LINC02042 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I112746 Enhancer 0.8 FANTOM5 0.8 +2.4 2398 0.3 MEIS2 PKNOX1 ATF1 TEAD4 TAL1 FOSL1 TCF12 CTBP1 NCOR1 VEZF1 CD200R1 CCDC80 LINC02042 LOC100653395
GH03I112773 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -27.7 -27716 7.3 NFIB SIN3A RFX5 FOS IKZF2 RUNX3 SMARCC1 USF2 CEBPB REST CD200R1 ENSG00000242770 CD200R1L ATG3 LINC02042
GH03I112751 Enhancer 0.5 ENCODE 0.8 -3.0 -3011 1.2 SP1 CTBP1 PKNOX1 FOXK2 ZNF843 SP7 CD200R1 ENSG00000242770 LINC02042
GH03I112767 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -18.1 -18085 0.8 POLR2A IKZF1 CEBPB CEBPG IKZF2 RUNX3 SPI1 ENSG00000242770 CD200R1L ATG3 LINC02042
GH03I112734 Enhancer 0.9 Ensembl ENCODE 0.4 +14.4 14418 0.6 CTCF BACH1 IRF4 RAD21 ZNF143 SMC3 FOSL2 ZNF444 BCLAF1 RUNX3 CD200R1 ENSG00000242770 LINC02042 LOC100653395
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02042 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02042 Gene

Genomic Locations for LINC02042 Gene
chr3:112,736,447-112,749,319
(GRCh38/hg38)
Size:
12,873 bases
Orientation:
Minus strand
chr3:112,455,294-112,468,166
(GRCh37/hg19)

Genomic View for LINC02042 Gene

Genes around LINC02042 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02042 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02042 Gene

Proteins for LINC02042 Gene

Post-translational modifications for LINC02042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02042 Gene

Domains & Families for LINC02042 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02042 Gene

Function for LINC02042 Gene

Phenotypes From GWAS Catalog for LINC02042 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02042 Gene

Localization for LINC02042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02042 Gene

Pathways & Interactions for LINC02042 Gene

SuperPathways for LINC02042 Gene

No Data Available

Interacting Proteins for LINC02042 Gene

Gene Ontology (GO) - Biological Process for LINC02042 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02042 Gene

Drugs & Compounds for LINC02042 Gene

No Compound Related Data Available

Transcripts for LINC02042 Gene

mRNA/cDNA for LINC02042 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02042 Gene

No ASD Table

Relevant External Links for LINC02042 Gene

GeneLoc Exon Structure for
LINC02042
ECgene alternative splicing isoforms for
LINC02042

Expression for LINC02042 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02042 Gene

Orthologs for LINC02042 Gene

Evolution for LINC02042 Gene

ENSEMBL:
Gene Tree for LINC02042 (if available)
TreeFam:
Gene Tree for LINC02042 (if available)

No data available for Orthologs for LINC02042 Gene

Paralogs for LINC02042 Gene

No data available for Paralogs for LINC02042 Gene

Variants for LINC02042 Gene

Sequence variations from dbSNP and Humsavar for LINC02042 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000196135 -- 112,747,553(-) G/T intron_variant
rs1000446736 -- 112,740,662(-) C/G non_coding_transcript_variant
rs1000591493 -- 112,740,421(-) A/G non_coding_transcript_variant
rs1000978847 -- 112,743,564(-) C/T intron_variant
rs1001358421 -- 112,737,214(-) T/C intron_variant

Additional Variant Information for LINC02042 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02042

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02042 Gene

Disorders for LINC02042 Gene

Additional Disease Information for LINC02042

No disorders were found for LINC02042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02042 Gene

Publications for LINC02042 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02042 Gene

Sources for LINC02042 Gene

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