Aliases for LINC02035 Gene

Subcategory (RNA class) for LINC02035 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02035 Gene

  • Long Intergenic Non-Protein Coding RNA 2035 2 3 5
  • LINC02035 2 5 165
  • NONHSAG035903.2 91

External Ids for LINC02035 Gene

Summaries for LINC02035 Gene

GeneCards Summary for LINC02035 Gene

LINC02035 (Long Intergenic Non-Protein Coding RNA 2035) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02035 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02035 Gene

Genomics for LINC02035 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02035 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J122885 Promoter/Enhancer 0.7 EPDnew Ensembl 608.7 +0.3 287 2.8 RNF2 GATA2 LINC02035 SEMA5B HSPBAP1 SLC49A4 PARP14 piR-61945-360
GH03J122792 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.3 -91.5 -91512 5.6 SP1 HNRNPL CREB1 GATAD2A ATF7 TEAD4 PRDM10 ZNF629 TFE3 RFX1 SLC49A4 HSPBAP1 IQCB1 SEC22A ENSG00000273454 ENSG00000272758 PARP14 LINC02035 PARP9 DTX3L
GH03J122678 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.3 -205.2 -205215 5.9 GATAD2A CTCF PRDM10 POLR2A LARP7 STAT3 ZNF143 RELA RBFOX2 PATZ1 PARP14 DTX3L PARP9 HSPBAP1 SLC49A4 LINC02035 CSTA KPNA1 piR-49423-167
GH03J122766 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 9.1 -118.3 -118292 3.6 SPI1 POLR2A lnc-SEMA5B-2 SLC49A4 HSPBAP1 PARP14 PARP9 DTX3L LINC02035 CSTA KPNA1 SNODB259
GH03J122788 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 9.4 -96.8 -96842 2.1 PRDM1 ZNF600 ZBTB40 ZBTB17 SPI1 HSPBAP1 LINC02035 piR-32677-344 PARP14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02035 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02035 Gene

Genomic Locations for LINC02035 Gene
chr3:122,886,513-122,892,416
(GRCh38/hg38)
Size:
5,904 bases
Orientation:
Plus strand
chr3:122,605,360-122,611,263
(GRCh37/hg19)
Size:
5,904 bases
Orientation:
Plus strand

Genomic View for LINC02035 Gene

Genes around LINC02035 on UCSC Golden Path with GeneCards custom track
LINC02035 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02035 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02035 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02035 Gene

Proteins for LINC02035 Gene

Post-translational modifications for LINC02035 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02035 Gene

Domains & Families for LINC02035 Gene

Gene Families for LINC02035 Gene

genes like me logo Genes that share domains with LINC02035: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02035 Gene

Function for LINC02035 Gene

Phenotypes From GWAS Catalog for LINC02035 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02035 Gene

Localization for LINC02035 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02035 Gene

Pathways & Interactions for LINC02035 Gene

PathCards logo

SuperPathways for LINC02035 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02035 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02035 Gene

Drugs & Compounds for LINC02035 Gene

No Compound Related Data Available

Transcripts for LINC02035 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02035 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DD27_9606 lncRNA 5904 4

HGNC: 52875,

RefSeq: NR_024618,

LNCipedia: LINC02035:5,

NONCODE: NONHSAT091509.2,

URS000076FBE9_9606 lncRNA 5476 2

Ensembl: ENST00000610128 (view in UCSC) ,

LNCipedia: LINC02035:7,

URS000035033C_9606 lncRNA 5456 1

LNCipedia: LINC02035:6,

LINC02035 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02035 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02035 Gene

No ASD Table

Relevant External Links for LINC02035 Gene

GeneLoc Exon Structure for
LINC02035

Expression for LINC02035 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02035

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02035 Gene

Orthologs for LINC02035 Gene

Evolution for LINC02035 Gene

ENSEMBL:
Gene Tree for LINC02035 (if available)
TreeFam:
Gene Tree for LINC02035 (if available)

No data available for Orthologs for LINC02035 Gene

Paralogs for LINC02035 Gene

No data available for Paralogs for LINC02035 Gene

Variants for LINC02035 Gene

Additional dbSNP identifiers (rs#s) for LINC02035 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02035 Gene

Variant ID Type Subtype PubMed ID
nsv517377 CNV gain+loss 19592680
nsv829706 CNV gain 17160897

Additional Variant Information for LINC02035 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02035

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02035 Gene

Disorders for LINC02035 Gene

No disorders were found for LINC02035 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02035 Gene

Publications for LINC02035 Gene

No publications were found for LINC02035 Gene.

No data available for Mastermind for LINC02035 Gene

Products for LINC02035 Gene

Sources for LINC02035 Gene