Aliases for LINC02020 Gene

Subcategory (RNA class) for LINC02020 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02020 Gene

  • Long Intergenic Non-Protein Coding RNA 2020 2 3 5
  • LINC02020 2 168
  • HSALNG0031372 167
  • NONHSAG036905 92

External Ids for LINC02020 Gene

Summaries for LINC02020 Gene

GeneCards Summary for LINC02020 Gene

LINC02020 (Long Intergenic Non-Protein Coding RNA 2020) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02020 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02020 Gene

Genomics for LINC02020 Gene

GeneHancer (GH) Regulatory Elements for LINC02020 Gene

Promoters and enhancers for LINC02020 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J186417 Enhancer 0.8 Ensembl ENCODE 11.9 -20.9 -20854 2.2 JUND FOS FOSL2 PBX2 FOSL1 BATF PRDM6 FEZF1 MEIS2 JUNB LINC02020 RF00017-4201 DGKG
GH03J186453 Enhancer 0.6 Ensembl ENCODE 15 +13.5 13478 0.9 ZIC2 FOS NR3C1 EZH2 ZNF335 LINC02020 LINC02052 piR-45035-138 LINC02051
GH03J186426 Enhancer 0.6 Ensembl 13.2 -12.4 -12354 3.6 EP300 CTCF TEAD4 NR2F2 HDAC2 SPI1 GATA3 PAX5 RAD21 JUND LINC02020 ETV5 ETV5-AS1 RF00017-4201
GH03J186432 Enhancer 0.5 Ensembl 13.3 -6.7 -6654 1 ZKSCAN1 USF1 RCOR1 JUNB CEBPB NFIC FOS USF2 STAT3 LINC02020 RF00017-4201
GH03J186481 Enhancer 0.5 Ensembl 6.5 +42.5 42476 0.5 ZNF623 ZNF213 REST ZFP64 ZNF555 ZNF680 ZBTB8A ZNF577 ZNF101 ZNF140 RFC4 TBCCD1 LINC02020 LINC02051 lnc-DNAJB11-1 LINC02052
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02020 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02020 Gene

Genomic Locations for LINC02020 Gene
chr3:186,439,155-186,457,299
(GRCh38/hg38)
Size:
18,145 bases
Orientation:
Plus strand
chr3:186,158,134-186,168,485
(GRCh37/hg19)
Size:
10,352 bases
Orientation:
Plus strand

Genomic View for LINC02020 Gene

Genes around LINC02020 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02020 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02020 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02020 Gene

Proteins for LINC02020 Gene

Post-translational modifications for LINC02020 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02020 Gene

Domains & Families for LINC02020 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02020 Gene

Function for LINC02020 Gene

Phenotypes From GWAS Catalog for LINC02020 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02020 Gene

Localization for LINC02020 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02020 Gene

Pathways & Interactions for LINC02020 Gene

PathCards logo

SuperPathways for LINC02020 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02020 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02020 Gene

Drugs & Compounds for LINC02020 Gene

No Compound Related Data Available

Transcripts for LINC02020 Gene

mRNA/cDNA for LINC02020 Gene

42 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
27 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
11 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02020 Gene

No ASD Table

Relevant External Links for LINC02020 Gene

GeneLoc Exon Structure for
LINC02020

Expression for LINC02020 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02020 Gene

Orthologs for LINC02020 Gene

Evolution for LINC02020 Gene

ENSEMBL:
Gene Tree for LINC02020 (if available)
TreeFam:
Gene Tree for LINC02020 (if available)

No data available for Orthologs for LINC02020 Gene

Paralogs for LINC02020 Gene

No data available for Paralogs for LINC02020 Gene

Variants for LINC02020 Gene

Additional dbSNP identifiers (rs#s) for LINC02020 Gene

Additional Variant Information for LINC02020 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02020

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02020 Gene

Disorders for LINC02020 Gene

Additional Disease Information for LINC02020

No disorders were found for LINC02020 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02020 Gene

Publications for LINC02020 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC02020 Gene

Products for LINC02020 Gene

Sources for LINC02020 Gene