Aliases for LINC02006 Gene

Subcategory (RNA class) for LINC02006 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02006 Gene

  • Long Intergenic Non-Protein Coding RNA 2006 2 3 5
  • LINC02006 2 168
  • HSALNG0029935 167
  • NONHSAG036431 92

External Ids for LINC02006 Gene

Summaries for LINC02006 Gene

GeneCards Summary for LINC02006 Gene

LINC02006 (Long Intergenic Non-Protein Coding RNA 2006) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02006 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02006 Gene

Genomics for LINC02006 Gene

GeneHancer (GH) Regulatory Elements for LINC02006 Gene

Promoters and enhancers for LINC02006 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J153979 Enhancer 0.6 Ensembl 500.7 0.0 -46 1.3 NCOR1 ZNF316 TBP NFE2 TAL1 SMAD5 TCF12 DPF2 POLR2A CBFA2T2 LINC02006 ARHGEF26-AS1 piR-53114-016
GH03J153621 Enhancer 1 Ensembl ENCODE dbSUPER 10.7 +353.8 353786 10 CTCF RELA POLR2A NFE2 BATF FOS NFE2L1 MAFG GATA2 NFE2L2 LINC02006 piR-39701-039 piR-43107-223
GH03J153599 Enhancer 0.9 Ensembl ENCODE 10.3 +379.4 379385 3.2 FOXK2 NCOR1 JUND FOS SKI FOXA2 SMAD4 FOSL2 EHMT2 RXRA LINC02006 ENSG00000200162 piR-39279-030
GH03J153613 Enhancer 0.6 Ensembl ENCODE 8.4 +366.0 366049 2.7 FOS HLF POLR2A CEBPB MYC STAT3 piR-50443-273 LINC02006 piR-39701-039
GH03J153639 Enhancer 0.6 Ensembl ENCODE 5.9 +338.4 338440 4.3 NFIC NFE2 NFIB POU5F1 NANOG LINC02006 piR-43107-223 piR-39701-039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02006 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02006 Gene

Genomic Locations for LINC02006 Gene
chr3:153,383,526-153,980,186
(GRCh38/hg38)
Size:
596,661 bases
Orientation:
Minus strand
chr3:153,102,723-153,697,975
(GRCh37/hg19)
Size:
595,253 bases
Orientation:
Minus strand

Genomic View for LINC02006 Gene

Genes around LINC02006 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02006 Gene

Proteins for LINC02006 Gene

Post-translational modifications for LINC02006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02006 Gene

Domains & Families for LINC02006 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02006 Gene

Function for LINC02006 Gene

Phenotypes From GWAS Catalog for LINC02006 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02006 Gene

Localization for LINC02006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02006 Gene

Pathways & Interactions for LINC02006 Gene

PathCards logo

SuperPathways for LINC02006 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02006 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02006 Gene

Drugs & Compounds for LINC02006 Gene

No Compound Related Data Available

Transcripts for LINC02006 Gene

mRNA/cDNA for LINC02006 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02006 Gene

No ASD Table

Relevant External Links for LINC02006 Gene

GeneLoc Exon Structure for
LINC02006

Expression for LINC02006 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02006 Gene

Orthologs for LINC02006 Gene

Evolution for LINC02006 Gene

ENSEMBL:
Gene Tree for LINC02006 (if available)
TreeFam:
Gene Tree for LINC02006 (if available)

No data available for Orthologs for LINC02006 Gene

Paralogs for LINC02006 Gene

No data available for Paralogs for LINC02006 Gene

Variants for LINC02006 Gene

Additional dbSNP identifiers (rs#s) for LINC02006 Gene

Additional Variant Information for LINC02006 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02006

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02006 Gene

Disorders for LINC02006 Gene

Additional Disease Information for LINC02006

No disorders were found for LINC02006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02006 Gene

Publications for LINC02006 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC02006 Gene

Products for LINC02006 Gene

Sources for LINC02006 Gene