Aliases for LINC02003 Gene

Subcategory (RNA class) for LINC02003 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02003 Gene

  • Long Intergenic Non-Protein Coding RNA 2003 2 3 5
  • LINC02003 2 5 165
  • NONHSAG022656.2 91

External Ids for LINC02003 Gene

Summaries for LINC02003 Gene

GeneCards Summary for LINC02003 Gene

LINC02003 (Long Intergenic Non-Protein Coding RNA 2003) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02003 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02003 Gene

Genomics for LINC02003 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02003 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072342 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.1 81 1.5 PRDM10 ZNF629 PATZ1 ZNF341 SCRT2 KLF9 SP2 ESR1 ZBTB17 ATF2 LINC02003 lnc-SOX9-7 SOX9 LINC00511 LINC00673 SLC39A11
GH17J072341 Enhancer 0.2 ENCODE 600.7 -0.9 -872 0.1 LINC02003 FJ601684-191 SOX9 LINC00511 LINC00673 SLC39A11
GH17J072337 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.7 -3.3 -3342 3.1 GATAD2A ATF7 ZNF629 ZNF692 RCOR2 RXRB GABPA ZNF600 CEBPA SOX13 LINC00511 LINC02003 FJ601684-191 SOX9 LINC00673 SLC39A11
GH17J072361 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 +20.2 20209 2.6 HNRNPL GATAD2A RCOR2 RXRB CEBPA SOX13 CEBPB NR3C1 FOXA2 KAT7 LINC02003 lnc-SOX9-7 SOX9 LINC00511 LINC00673 SLC39A11
GH17J072351 Enhancer 0.9 Ensembl CraniofacialAtlas 0.4 +9.5 9538 1.5 ZIC2 ZNF600 CTBP1 ZNF444 ZBTB48 ZBTB17 ZNF217 ZNF207 GATAD2B WT1 LINC02003 lnc-SOX9-7 SOX9 LINC00511 LINC00673 SLC39A11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02003 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02003 Gene

Genomic Locations for LINC02003 Gene
chr17:72,342,692-72,355,136
(GRCh38/hg38)
Size:
12,445 bases
Orientation:
Plus strand
chr17:70,339,081-70,351,277
(GRCh37/hg19)
Size:
12,197 bases
Orientation:
Plus strand

Genomic View for LINC02003 Gene

Genes around LINC02003 on UCSC Golden Path with GeneCards custom track
LINC02003 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02003 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02003 Gene

Proteins for LINC02003 Gene

Post-translational modifications for LINC02003 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02003 Gene

Domains & Families for LINC02003 Gene

Gene Families for LINC02003 Gene

genes like me logo Genes that share domains with LINC02003: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02003 Gene

Function for LINC02003 Gene

Phenotypes From GWAS Catalog for LINC02003 Gene

genes like me logo Genes that share phenotypes with LINC02003: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02003 Gene

Localization for LINC02003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02003 Gene

Pathways & Interactions for LINC02003 Gene

PathCards logo

SuperPathways for LINC02003 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02003 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02003 Gene

Drugs & Compounds for LINC02003 Gene

No Compound Related Data Available

Transcripts for LINC02003 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02003 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A771EF_9606 lncRNA 1962 3

HGNC: 27099,

RefSeq: NR_135222,

LNCipedia: LINC02003:2,

URS00004B234F_9606 lncRNA 1833 3

Ensembl: ENST00000577573 (view in UCSC) ,

LNCipedia: LINC02003:8,

NONCODE: NONHSAT055682.2,

URS0000EF1FCA_9606 lncRNA 1931 1

Ensembl: ENST00000664653 (view in UCSC) ,

URS0000EEC0CC_9606 lncRNA 1658 1

Ensembl: ENST00000656431 (view in UCSC) ,

URS0000EEB1EB_9606 lncRNA 1484 1

Ensembl: ENST00000663290 (view in UCSC) ,

LINC02003 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02003 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02003 Gene

No ASD Table

Relevant External Links for LINC02003 Gene

GeneLoc Exon Structure for
LINC02003

Expression for LINC02003 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02003

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02003 Gene

Orthologs for LINC02003 Gene

Evolution for LINC02003 Gene

ENSEMBL:
Gene Tree for LINC02003 (if available)
TreeFam:
Gene Tree for LINC02003 (if available)

No data available for Orthologs for LINC02003 Gene

Paralogs for LINC02003 Gene

No data available for Paralogs for LINC02003 Gene

Variants for LINC02003 Gene

Additional dbSNP identifiers (rs#s) for LINC02003 Gene

Additional Variant Information for LINC02003 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02003

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02003 Gene

Disorders for LINC02003 Gene

No disorders were found for LINC02003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02003 Gene

Publications for LINC02003 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02003 Gene

Products for LINC02003 Gene

Sources for LINC02003 Gene