Aliases for LINC01999 Gene

Subcategory (RNA class) for LINC01999 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01999 Gene

  • Long Intergenic Non-Protein Coding RNA 1999 2 3 5
  • LINC01999 2 5 165
  • HSALNG0117844 164

External Ids for LINC01999 Gene

Summaries for LINC01999 Gene

GeneCards Summary for LINC01999 Gene

LINC01999 (Long Intergenic Non-Protein Coding RNA 1999) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01999 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01999 Gene

Genomics for LINC01999 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01999 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060576 Promoter/Enhancer 0.9 EPDnew ENCODE 0.4 +13.0 13004 1.6 IKZF1 PRDM1 CTCF HMBOX1 ZBTB26 YY1 SMC3 NR2F2 RAD21 ZNF335 PPM1D HEATR6 piR-45035-091 LINC01999 lnc-APPBP2-6 APPBP2
GH17J060569 Enhancer 0.7 ENCODE 0.4 +7.7 7715 5.7 GATAD2A CTCF TEAD4 TFE3 ZNF512 MTA2 TRIM22 CEBPB RAD21 ZNF766 PPM1D ENSG00000275860 piR-45035-091 LINC01999 lnc-APPBP2-6 APPBP2
GH17J060586 Enhancer 0.6 ENCODE 0.4 +21.9 21933 0.1 GATAD2A CTCF PRDM10 REST ZNF766 SMC3 AFF1 ZNF205 MIER1 SAP130 PPM1D lnc-APPBP2-6 piR-45035-091 LINC01999 APPBP2
GH17J060579 Enhancer 0.5 ENCODE 0.4 +14.8 14789 0.2 SOX6 CEBPB NFIC CEBPG NFIA MEIS2 APPBP2 piR-45035-091 LINC01999 PPM1D lnc-APPBP2-6
GH17J060568 Enhancer 0.3 ENCODE 0.7 +3.6 3620 0 GATA3 piR-45035-091 LINC01999 RPSAP66 PPM1D APPBP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01999 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01999 Gene

Genomic Locations for LINC01999 Gene
chr17:60,564,546-60,586,623
(GRCh38/hg38)
Size:
22,078 bases
Orientation:
Plus strand

Genomic View for LINC01999 Gene

Genes around LINC01999 on UCSC Golden Path with GeneCards custom track
LINC01999 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01999 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01999 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01999 Gene

Proteins for LINC01999 Gene

Post-translational modifications for LINC01999 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01999 Gene

Domains & Families for LINC01999 Gene

Gene Families for LINC01999 Gene

genes like me logo Genes that share domains with LINC01999: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01999 Gene

Function for LINC01999 Gene

Phenotypes From GWAS Catalog for LINC01999 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01999 Gene

Localization for LINC01999 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01999 Gene

Pathways & Interactions for LINC01999 Gene

PathCards logo

SuperPathways for LINC01999 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01999 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01999 Gene

Drugs & Compounds for LINC01999 Gene

No Compound Related Data Available

Transcripts for LINC01999 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01999 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D5614_9606 lncRNA 646 3

Ensembl: ENST00000592917 (view in UCSC) ,

LncBook: HSALNT0243413,

LNCipedia: LINC01999:5,

URS00007E496C_9606 lncRNA 644 3

HGNC: 52834,

RefSeq: NR_126009,

LNCipedia: LINC01999:4,

LINC01999 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01999 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01999 Gene

No ASD Table

Relevant External Links for LINC01999 Gene

GeneLoc Exon Structure for
LINC01999

Expression for LINC01999 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01999 Gene

Orthologs for LINC01999 Gene

Evolution for LINC01999 Gene

ENSEMBL:
Gene Tree for LINC01999 (if available)
TreeFam:
Gene Tree for LINC01999 (if available)

No data available for Orthologs for LINC01999 Gene

Paralogs for LINC01999 Gene

No data available for Paralogs for LINC01999 Gene

Variants for LINC01999 Gene

Additional dbSNP identifiers (rs#s) for LINC01999 Gene

Additional Variant Information for LINC01999 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01999

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01999 Gene

Disorders for LINC01999 Gene

Additional Disease Information for LINC01999

No disorders were found for LINC01999 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01999 Gene

Publications for LINC01999 Gene

No publications were found for LINC01999 Gene.

Products for LINC01999 Gene

Sources for LINC01999 Gene