Aliases for LINC01996 Gene

Subcategory (RNA class) for LINC01996 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01996 Gene

  • Long Intergenic Non-Protein Coding RNA 1996 2 3 5
  • LINC01996 2 5 165
  • NONHSAG020580.2 91
  • HSALNG0114028 164

External Ids for LINC01996 Gene

Summaries for LINC01996 Gene

GeneCards Summary for LINC01996 Gene

LINC01996 (Long Intergenic Non-Protein Coding RNA 1996) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01996 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01996 Gene

Genomics for LINC01996 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01996 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J004602 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 605.6 -3.3 -3271 9 PRDM10 ZIC2 PATZ1 SP1 ZNF600 ZNF341 SCRT2 TCF7 ZSCAN29 OSR2 LINC01996 ENSG00000262165 SMTNL2 ALOX15
GH17J004597 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.2 -10.8 -10754 4.2 PRDM10 ZNF692 JUND ZIC2 PATZ1 ZNF341 KLF9 CEBPB TSHZ1 CTCF GGT6 SMTNL2 LINC01996 ENSG00000262165 ALOX15
GH17J004616 Enhancer 0.3 Ensembl dbSUPER 8.2 +7.5 7451 1 RF00026-413 RNU6-955P LINC01996 piR-57460-269 LOC105371498 ALOX15 SMTNL2
GH17J004583 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -24.6 -24620 7.8 CTCF PRDM10 ZNF692 ZIC2 RBFOX2 PKNOX1 PATZ1 ZNF501 ZNF600 ZNF341 SMTNL2 GGT6 RNU6-955P ALOX15 SHPK DERL2 VMO1 LINC01996
GH17J004594 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -15.3 -15299 1.1 CTCF RBFOX2 REST NRF1 RAD21 HIC1 ZNF143 ZKSCAN8 RNU6-955P ALOX15 GGT6 SMTNL2 LINC01996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01996 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01996 Gene

Genomic Locations for LINC01996 Gene
chr17:4,610,449-4,617,650
(GRCh38/hg38)
Size:
7,202 bases
Orientation:
Plus strand

Genomic View for LINC01996 Gene

Genes around LINC01996 on UCSC Golden Path with GeneCards custom track
LINC01996 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01996 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01996 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01996 Gene

Proteins for LINC01996 Gene

Post-translational modifications for LINC01996 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01996 Gene

Domains & Families for LINC01996 Gene

Gene Families for LINC01996 Gene

genes like me logo Genes that share domains with LINC01996: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01996 Gene

Function for LINC01996 Gene

Phenotypes From GWAS Catalog for LINC01996 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01996 Gene

Localization for LINC01996 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01996 Gene

Pathways & Interactions for LINC01996 Gene

PathCards logo

SuperPathways for LINC01996 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01996 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01996 Gene

Drugs & Compounds for LINC01996 Gene

No Compound Related Data Available

Transcripts for LINC01996 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01996 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F3D09_9606 lncRNA 1273 4

Ensembl: ENST00000573270 (view in UCSC) ,

LncBook: HSALNT0236240,

LNCipedia: LINC01996:5,

NONCODE: NONHSAT145095.2,

URS0000ABD849_9606 lncRNA 1270 2

HGNC: 52830,

RefSeq: NR_145431,

URS00008BAA59_9606 lncRNA 1272 1

LNCipedia: LINC01996:4,

LINC01996 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01996 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01996 Gene

No ASD Table

Relevant External Links for LINC01996 Gene

GeneLoc Exon Structure for
LINC01996

Expression for LINC01996 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01996

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01996 Gene

Orthologs for LINC01996 Gene

Evolution for LINC01996 Gene

ENSEMBL:
Gene Tree for LINC01996 (if available)
TreeFam:
Gene Tree for LINC01996 (if available)

No data available for Orthologs for LINC01996 Gene

Paralogs for LINC01996 Gene

No data available for Paralogs for LINC01996 Gene

Variants for LINC01996 Gene

Additional dbSNP identifiers (rs#s) for LINC01996 Gene

Additional Variant Information for LINC01996 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01996

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01996 Gene

Disorders for LINC01996 Gene

No disorders were found for LINC01996 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01996 Gene

Publications for LINC01996 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01996 Gene

Sources for LINC01996 Gene