Aliases for LINC01993 Gene

Subcategory (RNA class) for LINC01993 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01993 Gene

  • Long Intergenic Non-Protein Coding RNA 1993 2 3 5
  • LINC01993 2 170
  • NONHSAG022885 94

External Ids for LINC01993 Gene

Summaries for LINC01993 Gene

GeneCards Summary for LINC01993 Gene

LINC01993 (Long Intergenic Non-Protein Coding RNA 1993) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01993 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01993 Gene

Genomics for LINC01993 Gene

GeneHancer (GH) Regulatory Elements for LINC01993 Gene

Promoters and enhancers for LINC01993 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J078277 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 756.7 +0.0 36 1.8 ZFX EGR1 IKZF1 PRDM10 SCRT2 SCRT1 POLR2A ZFHX2 SUPT5H RFX5 LINC01993 lnc-TMEM235-1 RF00017-2567
GH17J078255 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 +20.9 20893 4.3 ZBTB40 SMARCE1 ELF1 RELA TEAD4 ZNF148 ELF3 CBFA2T2 SMARCA4 CREM THA1P PGS1 SOCS3 USP36 AFMID TK1 SEPTIN9 RPL9P29 TMC8 TMC6
GH17J078275 Enhancer 0.9 Ensembl ENCODE dbSUPER 6.3 +2.3 2257 1.2 POLR2A RUNX3 HDAC2 BATF ATF2 ZNF146 ZBTB33 KDM1A LINC01993 RF00017-2567
GH17J078265 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.8 8835 9.3 SIN3A SMARCE1 CC2D1A L3MBTL2 DACH1 MNT TEAD4 ZNF652 ZKSCAN8 ZNF148 USP36 C1QTNF1 PGS1 ENGASE TMEM235 ENSG00000200063 TIMP2 CANT1 TMC8 TMC6
GH17J078261 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.4 +15.6 15578 2.7 ZBTB40 MLX RBPJ SMARCE1 NR2F1 ETV6 ELF1 L3MBTL2 DACH1 ZNF121 RF00017-2567 piR-57461-093 PGS1 USP36 THA1P TMEM235 SOCS3 SEPTIN9 AFMID TK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01993 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01993 Gene

Genomic Locations for LINC01993 Gene
chr17:78,261,349-78,278,588
(GRCh38/hg38)
Size:
17,240 bases
Orientation:
Minus strand
chr17:76,257,430-76,274,573
(GRCh37/hg19)
Size:
17,144 bases
Orientation:
Minus strand

Genomic View for LINC01993 Gene

Genes around LINC01993 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01993 Gene

Proteins for LINC01993 Gene

Post-translational modifications for LINC01993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01993 Gene

Domains & Families for LINC01993 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01993 Gene

Function for LINC01993 Gene

Phenotypes From GWAS Catalog for LINC01993 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01993 Gene

Localization for LINC01993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01993 Gene

Pathways & Interactions for LINC01993 Gene

PathCards logo

SuperPathways for LINC01993 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01993 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01993 Gene

Drugs & Compounds for LINC01993 Gene

No Compound Related Data Available

Transcripts for LINC01993 Gene

mRNA/cDNA for LINC01993 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01993 Gene

No ASD Table

Relevant External Links for LINC01993 Gene

GeneLoc Exon Structure for
LINC01993
ECgene alternative splicing isoforms for
LINC01993

Expression for LINC01993 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01993 Gene

Orthologs for LINC01993 Gene

Evolution for LINC01993 Gene

ENSEMBL:
Gene Tree for LINC01993 (if available)
TreeFam:
Gene Tree for LINC01993 (if available)

No data available for Orthologs for LINC01993 Gene

Paralogs for LINC01993 Gene

No data available for Paralogs for LINC01993 Gene

Variants for LINC01993 Gene

Sequence variations from dbSNP and Humsavar for LINC01993 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000167733 -- 78,279,050(-) T/G upstream_transcript_variant
rs1000319344 -- 78,277,210(-) A/T intron_variant
rs1000606479 -- 78,274,805(-) A/G intron_variant
rs1000742345 -- 78,262,975(-) C/G intron_variant
rs1000898101 -- 78,280,467(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01993 Gene

Variant ID Type Subtype PubMed ID
nsv1066985 CNV gain 25217958
nsv1109107 CNV deletion 24896259
nsv470608 CNV loss 18288195
nsv524306 CNV gain 19592680
nsv952373 CNV deletion 24416366

Additional Variant Information for LINC01993 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01993

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01993 Gene

Disorders for LINC01993 Gene

Additional Disease Information for LINC01993

No disorders were found for LINC01993 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01993 Gene

Publications for LINC01993 Gene

No publications were found for LINC01993 Gene.

No data available for External Links for LINC01993 Gene

Products for LINC01993 Gene

Sources for LINC01993 Gene