Aliases for LINC01992 Gene

Subcategory (RNA class) for LINC01992 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01992 Gene

  • Long Intergenic Non-Protein Coding RNA 1992 2 3 5
  • LINC01992 2 170
  • NONHSAG021274 94
  • HSALNG0115428 169

External Ids for LINC01992 Gene

Summaries for LINC01992 Gene

GeneCards Summary for LINC01992 Gene

LINC01992 (Long Intergenic Non-Protein Coding RNA 1992) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01992 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01992 Gene

Genomics for LINC01992 Gene

GeneHancer (GH) Regulatory Elements for LINC01992 Gene

Promoters and enhancers for LINC01992 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J027990 Enhancer 0.6 Ensembl dbSUPER 750.6 +0.1 86 0.2 ATF7 JUN ATF2 LINC01992 ENSG00000251818 ENSG00000202389 piR-43105-268
GH17J027984 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +5.6 5585 3.4 ZBTB40 SMARCE1 CC2D1A L3MBTL2 DACH1 TEAD4 ZKSCAN8 GTF2F1 MLLT1 CBFA2T2 LYRM9 NLK ENSG00000251818 ENSG00000202389 SUPT6H KIAA0100 PIGS LINC01992 piR-43105-268
GH17J027991 Enhancer 0.7 Ensembl dbSUPER 0.6 -3.4 -3352 2.5 ZBTB40 L3MBTL2 PKNOX1 MGA ZNF766 ESRRA KDM1A CBX8 ENSG00000251818 ENSG00000202389 LYRM9 SPAG5-AS1 LGALS9 SLC46A1 LINC01992
GH17J027967 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +23.1 23113 1.5 SMARCE1 RUNX1 CC2D1A ELF1 L3MBTL2 DACH1 TEAD4 ZKSCAN8 ZFX BACH1 NOS2 PYY2 piR-43105-268 LINC01992
GH17J027974 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +16.6 16606 1.3 SMARCE1 L3MBTL2 ZFX SMARCA4 PRDM1 ZNF316 JUND NFE2 SCRT2 MGA ENSG00000251818 ENSG00000202389 LYRM9 LINC01992 piR-43105-268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01992 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01992 Gene

Genomic Locations for LINC01992 Gene
chr17:27,928,924-27,991,787
(GRCh38/hg38)
Size:
62,864 bases
Orientation:
Minus strand
chr17:26,256,574-26,301,249
(GRCh37/hg19)
Size:
44,676 bases
Orientation:
Minus strand

Genomic View for LINC01992 Gene

Genes around LINC01992 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01992 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01992 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01992 Gene

Proteins for LINC01992 Gene

Post-translational modifications for LINC01992 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01992 Gene

Domains & Families for LINC01992 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01992 Gene

Function for LINC01992 Gene

Phenotypes From GWAS Catalog for LINC01992 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01992 Gene

Localization for LINC01992 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01992 Gene

Pathways & Interactions for LINC01992 Gene

PathCards logo

SuperPathways for LINC01992 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01992 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01992 Gene

Drugs & Compounds for LINC01992 Gene

No Compound Related Data Available

Transcripts for LINC01992 Gene

mRNA/cDNA for LINC01992 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01992 Gene

No ASD Table

Relevant External Links for LINC01992 Gene

GeneLoc Exon Structure for
LINC01992
ECgene alternative splicing isoforms for
LINC01992

Expression for LINC01992 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01992 Gene

Orthologs for LINC01992 Gene

Evolution for LINC01992 Gene

ENSEMBL:
Gene Tree for LINC01992 (if available)
TreeFam:
Gene Tree for LINC01992 (if available)

No data available for Orthologs for LINC01992 Gene

Paralogs for LINC01992 Gene

No data available for Paralogs for LINC01992 Gene

Variants for LINC01992 Gene

Sequence variations from dbSNP and Humsavar for LINC01992 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000004239 -- 27,974,000(-) C/ intron_variant
rs1000061684 -- 27,959,974(-) T/C intron_variant
rs1000113722 -- 27,980,239(-) G/C intron_variant
rs1000160064 -- 27,989,822(-) C/T intron_variant
rs1000166726 -- 27,976,055(-) T/C intron_variant

Additional Variant Information for LINC01992 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01992

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01992 Gene

Disorders for LINC01992 Gene

Additional Disease Information for LINC01992

No disorders were found for LINC01992 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01992 Gene

Publications for LINC01992 Gene

No publications were found for LINC01992 Gene.

No data available for External Links for LINC01992 Gene

Products for LINC01992 Gene

Sources for LINC01992 Gene