Aliases for LINC01989 Gene

Subcategory (RNA class) for LINC01989 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01989 Gene

  • Long Intergenic Non-Protein Coding RNA 1989 2 3 5
  • LINC01989 2 170
  • NONHSAG021512 94
  • HSALNG0115857 169

External Ids for LINC01989 Gene

Summaries for LINC01989 Gene

GeneCards Summary for LINC01989 Gene

LINC01989 (Long Intergenic Non-Protein Coding RNA 1989) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01989 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01989 Gene

Genomics for LINC01989 Gene

GeneHancer (GH) Regulatory Elements for LINC01989 Gene

Promoters and enhancers for LINC01989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J034199 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.6 -4.9 -4897 3 SP1 CTCF CC2D1A DACH1 RAD21 ELF3 SP7 RELA ARID2 REST lnc-CCL2-13 CCL7 CCL8 CCL2 CCL1 ASIC2 CCL11 LINC01989
GH17J034156 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +38.7 38680 3.5 SP1 POLR2A ENSG00000263571 ENSG00000265356 LOC105371735 ASIC2 LINC01989
GH17J034171 Enhancer 0.9 Ensembl ENCODE 0.3 +24.8 24761 0.6 CTCF MYC MAX RAD21 TEAD4 MLLT1 REST TRIM22 ZNF143 JUND CCL7 ASIC2 LOC105371735 LINC01989
GH17J034186 Promoter 0.7 EPDnew Ensembl 0.4 +11.0 11003 3.6 piR-36770-042 piR-37432-045 piR-56229-033 piR-48950-071 ASIC2 piR-32559-181 LINC01989
GH17J034176 Enhancer 0.6 Ensembl ENCODE 0.4 +18.8 18804 4 DACH1 ZBTB2 JUN CTCF MCM7 ENSG00000264990 piR-56229-033 LINC01989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01989 Gene

Genomic Locations for LINC01989 Gene
chr17:34,157,181-34,196,204
(GRCh38/hg38)
Size:
39,024 bases
Orientation:
Minus strand
chr17:32,496,391-32,522,956
(GRCh37/hg19)
Size:
26,566 bases
Orientation:
Minus strand

Genomic View for LINC01989 Gene

Genes around LINC01989 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01989 Gene

Proteins for LINC01989 Gene

Post-translational modifications for LINC01989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01989 Gene

Domains & Families for LINC01989 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01989 Gene

Function for LINC01989 Gene

Phenotypes From GWAS Catalog for LINC01989 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01989 Gene

Localization for LINC01989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01989 Gene

Pathways & Interactions for LINC01989 Gene

PathCards logo

SuperPathways for LINC01989 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01989 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01989 Gene

Drugs & Compounds for LINC01989 Gene

No Compound Related Data Available

Transcripts for LINC01989 Gene

mRNA/cDNA for LINC01989 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(6) LncBook transcripts :
(9) LNCipedia transcripts :
(11) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01989 Gene

No ASD Table

Relevant External Links for LINC01989 Gene

GeneLoc Exon Structure for
LINC01989
ECgene alternative splicing isoforms for
LINC01989

Expression for LINC01989 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01989 Gene

Orthologs for LINC01989 Gene

Evolution for LINC01989 Gene

ENSEMBL:
Gene Tree for LINC01989 (if available)
TreeFam:
Gene Tree for LINC01989 (if available)

No data available for Orthologs for LINC01989 Gene

Paralogs for LINC01989 Gene

No data available for Paralogs for LINC01989 Gene

Variants for LINC01989 Gene

Sequence variations from dbSNP and Humsavar for LINC01989 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000022917 -- 34,184,574(-) T/G upstream_transcript_variant
rs1000267698 -- 34,173,939(-) A/C intron_variant
rs1000331754 -- 34,184,351(-) G/A upstream_transcript_variant
rs1000637919 -- 34,173,681(-) T/C intron_variant
rs1000663018 -- 34,169,058(-) C/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01989 Gene

Variant ID Type Subtype PubMed ID
dgv3141n100 CNV gain 25217958
esv3572553 CNV gain 25503493
nsv517423 CNV gain+loss 19592680
nsv519297 CNV gain 19592680
nsv574714 CNV gain 21841781

Additional Variant Information for LINC01989 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01989

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01989 Gene

Disorders for LINC01989 Gene

Additional Disease Information for LINC01989

No disorders were found for LINC01989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01989 Gene

Publications for LINC01989 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC01989 Gene

Products for LINC01989 Gene

Sources for LINC01989 Gene