Aliases for LINC01989 Gene

Data sources for LINC01989 Gene:

RNA type for LINC01989 Gene

lncRNA

Aliases for LINC01989 Gene

External Ids for LINC01989 Gene

Previous GeneCards Identifiers for LINC01989 Gene

  • GC17M034170

Summaries for LINC01989 Gene

GeneCards Summary for LINC01989 Gene

LINC01989 (Long Intergenic Non-Protein Coding RNA 1989) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01989 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01989 Gene

Genomics for LINC01989 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01989 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01989 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01989 Gene

Latest Assembly
chr17:34,157,180-34,219,420
(GRCh38/hg38)
Size:
62,241 bases
Orientation:
Minus strand

Previous Assembly
chr17:32,496,395-32,510,651
(GRCh37/hg19 by Entrez Gene)
Size:
14,257 bases
Orientation:
Minus strand

chr17:32,496,391-32,522,956
(GRCh37/hg19 by Ensembl)
Size:
26,566 bases
Orientation:
Minus strand

Genomic View for LINC01989 Gene

Genes around LINC01989 on UCSC Golden Path with GeneCards custom track
LINC01989 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01989 Gene

Proteins for LINC01989 Gene

Post-translational modifications for LINC01989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01989 Gene

Domains & Families for LINC01989 Gene

Gene Families for LINC01989 Gene

genes like me logo Genes that share domains with LINC01989: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01989 Gene

Function for LINC01989 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01989 Gene

Localization for LINC01989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01989 Gene

Pathways & Interactions for LINC01989 Gene

PathCards logo

SuperPathways for LINC01989 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01989 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01989 Gene

Drugs & Compounds for LINC01989 Gene

No Compound Related Data Available

Transcripts for LINC01989 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01989 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000608AC3_9606 lncRNA 1081 3

Ensembl: ENST00000566930 (view in UCSC) ,

LNCipedia: LINC01989:14,

NONCODE: NONHSAT053011.2,

URS0000065C6D_9606 lncRNA 306 3

Ensembl: ENST00000580792 (view in UCSC) ,

LNCipedia: LINC01989:12,

NONCODE: NONHSAT053009.2,

URS0000437F90_9606 lncRNA 273 3

Ensembl: ENST00000584724 (view in UCSC) ,

LNCipedia: LINC01989:15,

NONCODE: NONHSAT053010.2,

URS0000759BFA_9606 lncRNA 1077 1

RefSeq: NR_110748,

URS00008B9507_9606 lncRNA 735 3

LncBook: HSALNT0239634,

LNCipedia: LINC01989:16,

NONCODE: NONHSAT053012.2,

LINC01989 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01989 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01989 Gene

No ASD Table

Relevant External Links for LINC01989 Gene

GeneLoc Exon Structure for
LINC01989

Expression for LINC01989 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01989

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01989 Gene

Orthologs for LINC01989 Gene

Evolution for LINC01989 Gene

ENSEMBL:
Gene Tree for LINC01989 (if available)
TreeFam:
Gene Tree for LINC01989 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01989

No data available for Orthologs for LINC01989 Gene

Paralogs for LINC01989 Gene

No data available for Paralogs for LINC01989 Gene

Variants for LINC01989 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01989 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01989 Gene

Variant ID Type Subtype PubMed ID
dgv3141n100 CNV gain 25217958
esv3572553 CNV gain 25503493
nsv517423 CNV gain+loss 19592680
nsv519297 CNV gain 19592680
nsv574714 CNV gain 21841781

Additional Variant Information for LINC01989 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01989
Leiden Open Variation Database (LOVD)
LINC01989

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01989 Gene

Disorders for LINC01989 Gene

Additional Disease Information for LINC01989

No disorders were found for LINC01989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01989 Gene

Publications for LINC01989 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01989 Gene

Products for LINC01989 Gene

Sources for LINC01989 Gene