Aliases for LINC01987 Gene

Subcategory (RNA class) for LINC01987 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01987 Gene

  • Long Intergenic Non-Protein Coding RNA 1987 2 3 5
  • LINC01987 2 5 165
  • NONHSAG022862.2 91
  • HSALNG0118949 164

External Ids for LINC01987 Gene

Summaries for LINC01987 Gene

GeneCards Summary for LINC01987 Gene

LINC01987 (Long Intergenic Non-Protein Coding RNA 1987) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01987 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01987 Gene

Genomics for LINC01987 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01987 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J077727 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 600.7 +0.9 859 2.2 CREB1 CTCF ZBTB33 SOX13 RFX1 ZSCAN4 RXRB CEBPA FOXK2 SCRT2 LINC01987 LINC01973 TMC6 HSALNG0118946 TNRC6C SEPTIN9
GH17J077724 Enhancer 0.5 Ensembl 0.7 +3.6 3640 1.4 PRDM10 ZIC2 TCF12 MGA CTCF ARNT EBF1 L3MBTL2 FOXK2 LINC01973 LINC01987 HSALNG0118946 TNRC6C SEPTIN9
GH17J077709 Enhancer 0.4 Ensembl 0.4 +18.9 18859 1.4 SCRT2 USF1 ZNF133 TNRC6C RNU1-80P HSALNG0118946 LINC01987 SEPTIN9
GH17J077721 Enhancer 0.3 Ensembl 0.4 +6.7 6659 1 GLIS1 LINC01987 HSALNG0118946 TNRC6C SEPTIN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01987 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01987 Gene

Genomic Locations for LINC01987 Gene
chr17:77,722,219-77,728,560
(GRCh38/hg38)
Size:
6,342 bases
Orientation:
Minus strand
chr17:75,718,954-75,724,641
(GRCh37/hg19)
Size:
5,688 bases
Orientation:
Minus strand

Genomic View for LINC01987 Gene

Genes around LINC01987 on UCSC Golden Path with GeneCards custom track
LINC01987 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01987 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01987 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01987 Gene

Proteins for LINC01987 Gene

Post-translational modifications for LINC01987 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01987 Gene

Domains & Families for LINC01987 Gene

Gene Families for LINC01987 Gene

genes like me logo Genes that share domains with LINC01987: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01987 Gene

Function for LINC01987 Gene

Phenotypes From GWAS Catalog for LINC01987 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01987 Gene

Localization for LINC01987 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01987 Gene

Pathways & Interactions for LINC01987 Gene

PathCards logo

SuperPathways for LINC01987 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01987 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01987 Gene

Drugs & Compounds for LINC01987 Gene

No Compound Related Data Available

Transcripts for LINC01987 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01987 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001796A4_9606 lncRNA 2281 6

HGNC: 52819,

RefSeq: NR_104134,

Ensembl: ENST00000593118 (view in UCSC) ,

LncBook: HSALNT0245684,

LNCipedia: LINC01987:3,

NONCODE: NONHSAT056170.2,

URS00009BEC1C_9606 lncRNA 2281 2

LncBook: HSALNT0245685,

NONCODE: NONHSAT176606.1,

URS0000EA73DB_9606 lncRNA 2843 1

LncBook: HSALNT0245683,

LINC01987 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01987 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01987 Gene

No ASD Table

Relevant External Links for LINC01987 Gene

GeneLoc Exon Structure for
LINC01987

Expression for LINC01987 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01987

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01987 Gene

Orthologs for LINC01987 Gene

Evolution for LINC01987 Gene

ENSEMBL:
Gene Tree for LINC01987 (if available)
TreeFam:
Gene Tree for LINC01987 (if available)

No data available for Orthologs for LINC01987 Gene

Paralogs for LINC01987 Gene

No data available for Paralogs for LINC01987 Gene

Variants for LINC01987 Gene

Additional dbSNP identifiers (rs#s) for LINC01987 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01987 Gene

Variant ID Type Subtype PubMed ID
nsv2152 CNV insertion 18451855
nsv952371 CNV deletion 24416366

Additional Variant Information for LINC01987 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01987

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01987 Gene

Disorders for LINC01987 Gene

Additional Disease Information for LINC01987

No disorders were found for LINC01987 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01987 Gene

Publications for LINC01987 Gene

No publications were found for LINC01987 Gene.

No data available for Mastermind for LINC01987 Gene

Products for LINC01987 Gene

Sources for LINC01987 Gene