Aliases for LINC01987 Gene

Subcategory (RNA class) for LINC01987 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01987 Gene

  • Long Intergenic Non-Protein Coding RNA 1987 2 3 5
  • LINC01987 2 170
  • NONHSAG022862 94
  • HSALNG0118949 169

External Ids for LINC01987 Gene

Summaries for LINC01987 Gene

GeneCards Summary for LINC01987 Gene

LINC01987 (Long Intergenic Non-Protein Coding RNA 1987) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01987 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01987 Gene

Genomics for LINC01987 Gene

GeneHancer (GH) Regulatory Elements for LINC01987 Gene

Promoters and enhancers for LINC01987 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J077727 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 750.6 +0.9 859 2.2 CTCF RBPJ NR2F6 CEBPG SP5 CREB1 CEBPA SOX13 ZBTB33 RFX1 LINC01987 LINC01973 TMC6 HSALNG0118946
GH17J077724 Enhancer 0.5 Ensembl 0.6 +3.6 3640 1.4 L3MBTL2 ZIC2 PRDM10 MGA EBF1 FOXK2 LINC01973 LINC01987 HSALNG0118946
GH17J077709 Enhancer 0.4 Ensembl 0.4 +18.9 18859 1.4 ZNF133 SCRT2 USF1 SNHG20 TNRC6C RNU1-80P HSALNG0118946 LINC01987
GH17J077721 Enhancer 0.3 Ensembl 0.4 +6.7 6659 1 GLIS1 LINC01987 HSALNG0118946
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01987 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01987 Gene

Genomic Locations for LINC01987 Gene
chr17:77,722,219-77,728,560
(GRCh38/hg38)
Size:
6,342 bases
Orientation:
Minus strand
chr17:75,718,954-75,724,641
(GRCh37/hg19)
Size:
5,688 bases
Orientation:
Minus strand

Genomic View for LINC01987 Gene

Genes around LINC01987 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01987 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01987 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01987 Gene

Proteins for LINC01987 Gene

Post-translational modifications for LINC01987 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01987 Gene

Domains & Families for LINC01987 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01987 Gene

Function for LINC01987 Gene

Phenotypes From GWAS Catalog for LINC01987 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01987 Gene

Localization for LINC01987 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01987 Gene

Pathways & Interactions for LINC01987 Gene

PathCards logo

SuperPathways for LINC01987 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01987 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01987 Gene

Drugs & Compounds for LINC01987 Gene

No Compound Related Data Available

Transcripts for LINC01987 Gene

mRNA/cDNA for LINC01987 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01987 Gene

No ASD Table

Relevant External Links for LINC01987 Gene

GeneLoc Exon Structure for
LINC01987
ECgene alternative splicing isoforms for
LINC01987

Expression for LINC01987 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01987 Gene

Orthologs for LINC01987 Gene

Evolution for LINC01987 Gene

ENSEMBL:
Gene Tree for LINC01987 (if available)
TreeFam:
Gene Tree for LINC01987 (if available)

No data available for Orthologs for LINC01987 Gene

Paralogs for LINC01987 Gene

No data available for Paralogs for LINC01987 Gene

Variants for LINC01987 Gene

Sequence variations from dbSNP and Humsavar for LINC01987 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000451729 -- 77,729,882(-) A/G upstream_transcript_variant
rs1000986506 -- 77,729,616(-) G/A/T upstream_transcript_variant
rs1001110210 -- 77,724,628(-) G/C non_coding_transcript_variant
rs1001357441 -- 77,724,214(-) C/A non_coding_transcript_variant
rs1001516119 -- 77,725,522(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01987 Gene

Variant ID Type Subtype PubMed ID
nsv2152 CNV insertion 18451855
nsv952371 CNV deletion 24416366

Additional Variant Information for LINC01987 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01987

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01987 Gene

Disorders for LINC01987 Gene

Additional Disease Information for LINC01987

No disorders were found for LINC01987 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01987 Gene

Publications for LINC01987 Gene

No publications were found for LINC01987 Gene.

No data available for External Links for LINC01987 Gene

Products for LINC01987 Gene

Sources for LINC01987 Gene