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Aliases for LINC01987 Gene
Subcategory (RNA class) for LINC01987 Gene
lncRNA
Quality Score for this RNA gene is
15
Aliases for LINC01987 Gene
External Ids for LINC01987 Gene
- HGNC: 52819
- Entrez Gene: 100132174
- Ensembl: ENSG00000267790
Summaries for LINC01987 Gene
GeneCards Summary for LINC01987 Gene
LINC01987 (Long Intergenic Non-Protein Coding RNA 1987) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01987 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01987 Gene
Genomics for LINC01987 Gene
GeneHancer (GH) Regulatory Elements for LINC01987 Gene
Promoters and enhancers for LINC01987 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J077727 | Enhancer | 1.1 | Ensembl ENCODE CraniofacialAtlas | 750.6 | +0.9 | 859 | 2.2 | CTCF RBPJ NR2F6 CEBPG SP5 CREB1 CEBPA SOX13 ZBTB33 RFX1 | LINC01987 LINC01973 TMC6 HSALNG0118946 | |
| GH17J077724 | Enhancer | 0.5 | Ensembl | 0.6 | +3.6 | 3640 | 1.4 | L3MBTL2 ZIC2 PRDM10 MGA EBF1 FOXK2 | LINC01973 LINC01987 HSALNG0118946 | |
| GH17J077709 | Enhancer | 0.4 | Ensembl | 0.4 | +18.9 | 18859 | 1.4 | ZNF133 SCRT2 USF1 | SNHG20 TNRC6C RNU1-80P HSALNG0118946 LINC01987 | |
| GH17J077721 | Enhancer | 0.3 | Ensembl | 0.4 | +6.7 | 6659 | 1 | GLIS1 | LINC01987 HSALNG0118946 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01987 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LINC01987 Gene
Genomic Locations for LINC01987 Gene
- chr17:77,722,219-77,728,560
- (GRCh38/hg38)
- Size:
- 6,342 bases
- Orientation:
- Minus strand
- chr17:75,718,954-75,724,641
- (GRCh37/hg19)
- Size:
- 5,688 bases
- Orientation:
- Minus strand
Genomic View for LINC01987 Gene
Genes around LINC01987 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q25.3 by HGNC
- 17q25.3 by Entrez Gene
- 17q25.3 by Ensembl
LINC01987 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01987 Gene
Proteins for LINC01987 Gene
Post-translational modifications for LINC01987 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01987
- Origene Custom Protein Services for LINC01987
No data available for DME Specific Peptides for LINC01987 Gene
Domains & Families for LINC01987 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01987 Gene
Function for LINC01987 Gene
Phenotypes From GWAS Catalog for LINC01987 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01987 Gene
Localization for LINC01987 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01987 Gene
Transcripts for LINC01987 Gene
mRNA/cDNA for LINC01987 Gene
- (1) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000593118 2281 bps (ENST00000593118.1)
- (3) RNACentral transcripts :
- (1) LNCipedia transcripts :
- (2) NONCODE transcripts :
- (3) LncBook transcripts :
CRISPR Products
- Browse CRISPR knockouts for LINC01987
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for LINC01987 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01987 Gene
Orthologs for LINC01987 Gene
No data available for Orthologs for LINC01987 Gene
Paralogs for LINC01987 Gene
No data available for Paralogs for LINC01987 Gene
Variants for LINC01987 Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000451729 | -- | 77,729,882(-) | A/G | upstream_transcript_variant | |
| rs1000986506 | -- | 77,729,616(-) | G/A/T | upstream_transcript_variant | |
| rs1001110210 | -- | 77,724,628(-) | G/C | non_coding_transcript_variant | |
| rs1001357441 | -- | 77,724,214(-) | C/A | non_coding_transcript_variant | |
| rs1001516119 | -- | 77,725,522(-) | C/T | intron_variant |
Additional Variant Information for LINC01987 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01987
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01987 Gene
Disorders for LINC01987 Gene
Additional Disease Information for LINC01987
No disorders were found for LINC01987 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01987 Gene
Publications for LINC01987 Gene
No publications were found for LINC01987 Gene.
No data available for External Links for LINC01987 Gene
Products for LINC01987 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01987
- Origene Custom Protein Services for LINC01987
- Browse OriGene Inhibitory RNA Products For LINC01987
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01987
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01987
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01987
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01987
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01987
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01987
Sources for LINC01987 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource