Aliases for LINC01979 Gene

Data sources for LINC01979 Gene:

RNA type for LINC01979 Gene

lncRNA

Aliases for LINC01979 Gene

External Ids for LINC01979 Gene

Summaries for LINC01979 Gene

GeneCards Summary for LINC01979 Gene

LINC01979 (Long Intergenic Non-Protein Coding RNA 1979) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01979 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01979 Gene

Genomics for LINC01979 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01979 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079923 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 257.8 -1.4 -1419 11.1 ZNF654 ZNF600 SSRP1 ZMYM3 KLF9 CEBPA ZIC2 CHD4 REST KLF11 LINC01979 EIF4A3 ENGASE TBC1D16 CBX2 HSALNG0119149 LINC01978 lnc-CBX4-4 CBX4
GH17J079918 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 7 +6.4 6449 4.2 ZNF600 ZMYM3 ZIC2 ZNF341 MAX ZNF217 MBD2 KLF9 RXRA SMC3 LINC01978 LINC01979 CBX4 TBC1D16
GH17J079917 Enhancer 0.6 Ensembl dbSUPER 5.4 +9.4 9365 0.2 PAX8 ZSCAN4 KDM1A TAF1 LINC01978 LINC01979 HSALNG0119146 CBX4 TBC1D16
GH17J079915 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +11.2 11165 2.2 IKZF1 CEBPB REST DEK BHLHE40 MAX ZBTB7B SIN3A ZNF217 MBD2 HSALNG0119146 ENGASE LINC01978 LINC01979 CBX4 TBC1D16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01979 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01979 Gene

Latest Assembly
chr17:79,911,790-79,927,266
(GRCh38/hg38)
Size:
15,477 bases
Orientation:
Minus strand

Previous Assembly
chr17:77,889,051-77,900,524
(GRCh37/hg19 by Entrez Gene)
Size:
11,474 bases
Orientation:
Minus strand

chr17:77,889,051-77,900,524
(GRCh37/hg19 by Ensembl)
Size:
11,474 bases
Orientation:
Minus strand

Genomic View for LINC01979 Gene

Genes around LINC01979 on UCSC Golden Path with GeneCards custom track
LINC01979 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01979 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01979 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01979 Gene

Proteins for LINC01979 Gene

Post-translational modifications for LINC01979 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01979 Gene

Domains & Families for LINC01979 Gene

Gene Families for LINC01979 Gene

genes like me logo Genes that share domains with LINC01979: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01979 Gene

Function for LINC01979 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01979 Gene

Localization for LINC01979 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01979 Gene

Pathways & Interactions for LINC01979 Gene

PathCards logo

SuperPathways for LINC01979 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01979 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01979 Gene

Drugs & Compounds for LINC01979 Gene

No Compound Related Data Available

Transcripts for LINC01979 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01979 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000024EA05_9606 lncRNA 5277 4

RefSeq: NR_110850,

Ensembl: ENST00000576738 (view in UCSC) ,

LNCipedia: LINC01979:5,

NONCODE: NONHSAT056320.2,

URS00008BD2F1_9606 lncRNA 5116 2

LNCipedia: LINC01979:4,

NONCODE: NONHSAT056321.2,

URS0001BE6DFF_9606 lncRNA 2154 1

LncBook: HSALNT0246020,

URS0001BE195F_9606 lncRNA 2038 1

LncBook: HSALNT0246021,

URS0000E95C02_9606 lncRNA 631 1

LncBook: HSALNT0246017,

LINC01979 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01979 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01979 Gene

No ASD Table

Relevant External Links for LINC01979 Gene

GeneLoc Exon Structure for
LINC01979

Expression for LINC01979 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01979 Gene

Orthologs for LINC01979 Gene

Evolution for LINC01979 Gene

ENSEMBL:
Gene Tree for LINC01979 (if available)
TreeFam:
Gene Tree for LINC01979 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01979

No data available for Orthologs for LINC01979 Gene

Paralogs for LINC01979 Gene

No data available for Paralogs for LINC01979 Gene

Variants for LINC01979 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01979 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01979 Gene

Variant ID Type Subtype PubMed ID
esv3573831 CNV gain 25503493
nsv1063623 CNV loss 25217958
nsv469865 CNV loss 16826518
nsv470615 CNV loss 18288195
nsv9595 CNV loss 18304495

Additional Variant Information for LINC01979 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01979
Leiden Open Variation Database (LOVD)
LINC01979

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01979 Gene

Disorders for LINC01979 Gene

Additional Disease Information for LINC01979

No disorders were found for LINC01979 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01979 Gene

Publications for LINC01979 Gene

No publications were found for LINC01979 Gene.

No data available for Mastermind for LINC01979 Gene

Products for LINC01979 Gene

Sources for LINC01979 Gene