Aliases for LINC01978 Gene

Data sources for LINC01978 Gene:

RNA type for LINC01978 Gene

lncRNA

Aliases for LINC01978 Gene

External Ids for LINC01978 Gene

Summaries for LINC01978 Gene

GeneCards Summary for LINC01978 Gene

LINC01978 (Long Intergenic Non-Protein Coding RNA 1978) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01978 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01978 Gene

Genomics for LINC01978 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01978 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079918 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.5 1517 4.2 ZNF600 ZMYM3 ZIC2 ZNF341 MAX ZNF217 MBD2 KLF9 RXRA SMC3 LINC01978 LINC01979 CBX4 TBC1D16
GH17J079917 Enhancer 0.6 Ensembl dbSUPER 250.7 -1.4 -1399 0.2 PAX8 ZSCAN4 KDM1A TAF1 LINC01978 LINC01979 HSALNG0119146 CBX4 TBC1D16
GH17J079923 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.4 9385 11.1 ZNF654 ZNF600 SSRP1 ZMYM3 KLF9 CEBPA ZIC2 CHD4 REST KLF11 LINC01979 EIF4A3 ENGASE TBC1D16 CBX2 HSALNG0119149 LINC01978 lnc-CBX4-4 CBX4
GH17J079915 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -3.2 -3199 2.2 IKZF1 CEBPB REST DEK BHLHE40 MAX ZBTB7B SIN3A ZNF217 MBD2 HSALNG0119146 ENGASE LINC01978 LINC01979 CBX4 TBC1D16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01978 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01978 Gene

Latest Assembly
chr17:79,919,300-79,929,959
(GRCh38/hg38)
Size:
10,660 bases
Orientation:
Plus strand

Previous Assembly
chr17:77,893,156-77,897,809
(GRCh37/hg19 by Entrez Gene)
Size:
4,654 bases
Orientation:
Plus strand

chr17:77,893,156-77,899,261
(GRCh37/hg19 by Ensembl)
Size:
6,106 bases
Orientation:
Plus strand

Genomic View for LINC01978 Gene

Genes around LINC01978 on UCSC Golden Path with GeneCards custom track
LINC01978 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01978 Gene

Proteins for LINC01978 Gene

Post-translational modifications for LINC01978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01978 Gene

Domains & Families for LINC01978 Gene

Gene Families for LINC01978 Gene

genes like me logo Genes that share domains with LINC01978: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01978 Gene

Function for LINC01978 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01978 Gene

Localization for LINC01978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01978 Gene

Pathways & Interactions for LINC01978 Gene

PathCards logo

SuperPathways for LINC01978 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01978 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01978 Gene

Drugs & Compounds for LINC01978 Gene

No Compound Related Data Available

Transcripts for LINC01978 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01978 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001648A8_9606 lncRNA 1540 4

RefSeq: NR_110851,

Ensembl: ENST00000574526 (view in UCSC) ,

LNCipedia: LINC01978:15,

NONCODE: NONHSAT056323.2,

URS00001CB866_9606 lncRNA 542 2

Ensembl: ENST00000572353 (view in UCSC) ,

LNCipedia: LINC01978:17, LINC01978:20,

URS0000EED044_9606 lncRNA 1036 1

Ensembl: ENST00000655170 (view in UCSC) ,

URS0000D5BE94_9606 lncRNA 5039 2

LncBook: HSALNT0246018,

LNCipedia: LINC01978:22,

URS00008BD422_9606 lncRNA 984 2

LNCipedia: LINC01978:13,

NONCODE: NONHSAT056322.2,

LINC01978 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01978 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01978 Gene

No ASD Table

Relevant External Links for LINC01978 Gene

GeneLoc Exon Structure for
LINC01978

Expression for LINC01978 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01978

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01978 Gene

Orthologs for LINC01978 Gene

Evolution for LINC01978 Gene

ENSEMBL:
Gene Tree for LINC01978 (if available)
TreeFam:
Gene Tree for LINC01978 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01978

No data available for Orthologs for LINC01978 Gene

Paralogs for LINC01978 Gene

No data available for Paralogs for LINC01978 Gene

Variants for LINC01978 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01978 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01978 Gene

Variant ID Type Subtype PubMed ID
esv3573831 CNV gain 25503493
nsv1063623 CNV loss 25217958
nsv469865 CNV loss 16826518
nsv470615 CNV loss 18288195

Additional Variant Information for LINC01978 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01978
Leiden Open Variation Database (LOVD)
LINC01978

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01978 Gene

Disorders for LINC01978 Gene

Additional Disease Information for LINC01978

No disorders were found for LINC01978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01978 Gene

Publications for LINC01978 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

Products for LINC01978 Gene

Sources for LINC01978 Gene