LINC01973 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1973

GC17M077880
GIFtS:
12

Aliases for LINC01973 Gene

Subcategory (RNA class) for LINC01973 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01973 Gene

  • Long Intergenic Non-Protein Coding RNA 1973 2 3 5
  • LINC01973 2 170
  • NONHSAG022864 94
  • HSALNG0118967 169

External Ids for LINC01973 Gene

Summaries for LINC01973 Gene

GeneCards Summary for LINC01973 Gene

LINC01973 (Long Intergenic Non-Protein Coding RNA 1973) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01973 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01973 Gene

Genomics for LINC01973 Gene

GeneHancer (GH) Regulatory Elements for LINC01973 Gene

Promoters and enhancers for LINC01973 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077893 Enhancer 1.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 750.6 +1.4 1401 1.4 NR2F1 NR2F6 TEAD4 CTCF ZIC2 REST PKNOX1 POLR2A NR2C1 CTBP1 LINC01973 HSALNG0118973 TMEM235 lnc-TNRC6C-5
GH17J077894 Enhancer 0.3 Ensembl dbSUPER 750.6 +0.0 1 0.2 LINC01973 HSALNG0118973 RNU1-80P TNRC6C
GH17J077957 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.2 -65.1 -65127 4.2 ZNF785 ZBTB40 SP1 ZBTB6 MLX SMARCE1 POLR2A CTBP1 USF2 MIXL1 TNRC6C lnc-TMC6-5 BIRC5 CEP295NL SNHG20 USP36 RNU1-80P LINC01973 TMC8 TMC6
GH17J077801 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 +91.2 91197 2.2 RFX1 ZSCAN4 POLR2A MNT ZBTB17 RCOR1 ZFHX2 PAX8 SIN3A NFATC1 lnc-TMC6-1 TNRC6C LINC01973 RNU1-80P TMEM235 HSALNG0118960 LOC105371908
GH17J077863 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.9 +29.5 29474 2.6 MYC L3MBTL2 MAX DACH1 ZFX ZSCAN4 ZNF766 KLF4 RUNX3 NR2C2 lnc-TNRC6C-6 LINC01973 RNU1-80P RNU6-625P lnc-TNRC6C-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01973 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01973 Gene

Genomic Locations for LINC01973 Gene
chr17:77,877,330-77,894,102
(GRCh38/hg38)
Size:
16,773 bases
Orientation:
Minus strand
chr17:75,875,109-75,878,659
(GRCh37/hg19)
Size:
3,551 bases
Orientation:
Minus strand

Genomic View for LINC01973 Gene

Genes around LINC01973 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01973 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01973 Gene

Proteins for LINC01973 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01973 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01973 Gene

Domains & Families for LINC01973 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01973 Gene

Function for LINC01973 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01973 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01973

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01973 Gene

Localization for LINC01973 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01973 Gene

Pathways & Interactions for LINC01973 Gene

PathCards logo

SuperPathways for LINC01973 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01973 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01973 Gene

Drugs & Compounds for LINC01973 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01973 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01973 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01973

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01973 Gene

No ASD Table

Relevant External Links for LINC01973 Gene

GeneLoc Exon Structure for
LINC01973
ECgene alternative splicing isoforms for
LINC01973

Expression for LINC01973 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01973 Gene

Orthologs for LINC01973 Gene

Evolution for LINC01973 Gene

ENSEMBL:
Gene Tree for LINC01973 (if available)
TreeFam:
Gene Tree for LINC01973 (if available)

No data available for Orthologs for LINC01973 Gene

Paralogs for LINC01973 Gene

No data available for Paralogs for LINC01973 Gene

Variants for LINC01973 Gene

Sequence variations from dbSNP and Humsavar for LINC01973 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000046519 -- 77,883,913(-) T/A intron_variant
rs1000388165 -- 77,880,871(-) G/A non_coding_transcript_variant
rs1001050971 -- 77,882,569(-) C/T non_coding_transcript_variant
rs1001187362 -- 77,883,206(-) G/A non_coding_transcript_variant
rs1001267139 -- 77,883,452(-) G/A non_coding_transcript_variant

Additional Variant Information for LINC01973 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01973

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01973 Gene

Disorders for LINC01973 Gene

Additional Disease Information for LINC01973

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01973 Gene

Publications for LINC01973 Gene

No publications were found for LINC01973 Gene.

No data available for External Links for LINC01973 Gene

Products for LINC01973 Gene

Sources for LINC01973 Gene