Aliases for LINC01951 Gene

Subcategory (RNA class) for LINC01951 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01951 Gene

  • Long Intergenic Non-Protein Coding RNA 1951 2 3 5
  • LINC01951 2 170
  • NONHSAG042295 94
  • CTC-281M20.1 3

External Ids for LINC01951 Gene

Summaries for LINC01951 Gene

GeneCards Summary for LINC01951 Gene

LINC01951 (Long Intergenic Non-Protein Coding RNA 1951) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01951 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01951 Gene

Genomics for LINC01951 Gene

GeneHancer (GH) Regulatory Elements for LINC01951 Gene

Promoters and enhancers for LINC01951 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J174972 Enhancer 0.7 Ensembl ENCODE 0.3 +23.1 23091 0.7 ZNF217 CTBP1 SCRT1 DPF2 GATAD2B CUX1 RCOR1 FOXA1 SMARCE1 ENSG00000249403 LINC01951 piR-61532-258
GH05J174935 Enhancer 0.8 Ensembl ENCODE 0.2 +59.8 59767 0.3 CTCF RBPJ USF2 MAX RAD21 PRDM1 IKZF1 REST TRIM22 ZNF143 piR-38051-233 piR-61532-258 LINC01951
GH05J175022 Enhancer 0.2 FANTOM5 0.3 -27.0 -27010 0.3 piR-56037-021 LINC01951
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01951 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01951 Gene

Genomic Locations for LINC01951 Gene
chr5:174,919,082-174,995,731
(GRCh38/hg38)
Size:
76,650 bases
Orientation:
Minus strand
chr5:174,346,085-174,422,516
(GRCh37/hg19)
Size:
76,432 bases
Orientation:
Minus strand

Genomic View for LINC01951 Gene

Genes around LINC01951 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01951 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01951 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01951 Gene

Proteins for LINC01951 Gene

Post-translational modifications for LINC01951 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01951 Gene

Domains & Families for LINC01951 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01951 Gene

Function for LINC01951 Gene

Phenotypes From GWAS Catalog for LINC01951 Gene

Phenotypes for LINC01951 Gene

GenomeRNAi human phenotypes for LINC01951:
genes like me logo Genes that share phenotypes with LINC01951: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01951 Gene

Localization for LINC01951 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01951 Gene

Pathways & Interactions for LINC01951 Gene

PathCards logo

SuperPathways for LINC01951 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01951 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01951 Gene

Drugs & Compounds for LINC01951 Gene

No Compound Related Data Available

Transcripts for LINC01951 Gene

mRNA/cDNA for LINC01951 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01951 Gene

No ASD Table

Relevant External Links for LINC01951 Gene

GeneLoc Exon Structure for
LINC01951
ECgene alternative splicing isoforms for
LINC01951

Expression for LINC01951 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01951 Gene

Orthologs for LINC01951 Gene

Evolution for LINC01951 Gene

ENSEMBL:
Gene Tree for LINC01951 (if available)
TreeFam:
Gene Tree for LINC01951 (if available)

No data available for Orthologs for LINC01951 Gene

Paralogs for LINC01951 Gene

No data available for Paralogs for LINC01951 Gene

Variants for LINC01951 Gene

Sequence variations from dbSNP and Humsavar for LINC01951 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000041648 -- 174,931,289(-) A/G intron_variant
rs1000056344 -- 174,986,051(-) A/T intron_variant
rs1000081181 -- 174,947,045(-) C/A/G/T intron_variant
rs1000145448 -- 174,948,525(-) A/T intron_variant
rs1000241292 -- 174,929,295(-) G/A/T intron_variant

Additional Variant Information for LINC01951 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01951

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01951 Gene

Disorders for LINC01951 Gene

Additional Disease Information for LINC01951

No disorders were found for LINC01951 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01951 Gene

Publications for LINC01951 Gene

No publications were found for LINC01951 Gene.

Products for LINC01951 Gene

Sources for LINC01951 Gene