Aliases for LINC01947 Gene

Subcategory (RNA class) for LINC01947 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01947 Gene

  • Long Intergenic Non-Protein Coding RNA 1947 2 3 5
  • LINC01947 2 168
  • NONHSAG042156 92
  • HSALNG0046399 167
  • CTB-7E3.1 3

External Ids for LINC01947 Gene

Summaries for LINC01947 Gene

GeneCards Summary for LINC01947 Gene

LINC01947 (Long Intergenic Non-Protein Coding RNA 1947) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01947 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01947 Gene

Genomics for LINC01947 Gene

Genomic Locations for LINC01947 Gene

Genomic Locations for LINC01947 Gene
chr5:166,904,939-166,926,371
(GRCh38/hg38)
Size:
21,433 bases
Orientation:
Minus strand
chr5:166,332,227-166,353,375
(GRCh37/hg19)
Size:
21,149 bases
Orientation:
Minus strand

Genomic View for LINC01947 Gene

Genes around LINC01947 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01947 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01947 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01947 Gene

No data available for GeneHancer (GH) Regulatory Elements for LINC01947 Gene

Proteins for LINC01947 Gene

Post-translational modifications for LINC01947 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01947 Gene

Domains & Families for LINC01947 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01947 Gene

Function for LINC01947 Gene

Phenotypes From GWAS Catalog for LINC01947 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01947 Gene

Localization for LINC01947 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01947 Gene

Pathways & Interactions for LINC01947 Gene

PathCards logo

SuperPathways for LINC01947 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01947 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01947 Gene

Drugs & Compounds for LINC01947 Gene

No Compound Related Data Available

Transcripts for LINC01947 Gene

mRNA/cDNA for LINC01947 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01947 Gene

No ASD Table

Relevant External Links for LINC01947 Gene

GeneLoc Exon Structure for
LINC01947

Expression for LINC01947 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01947 Gene

Orthologs for LINC01947 Gene

Evolution for LINC01947 Gene

ENSEMBL:
Gene Tree for LINC01947 (if available)
TreeFam:
Gene Tree for LINC01947 (if available)

No data available for Orthologs for LINC01947 Gene

Paralogs for LINC01947 Gene

No data available for Paralogs for LINC01947 Gene

Variants for LINC01947 Gene

Additional dbSNP identifiers (rs#s) for LINC01947 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01947 Gene

Variant ID Type Subtype PubMed ID
esv2678561 CNV deletion 23128226

Additional Variant Information for LINC01947 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01947

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01947 Gene

Disorders for LINC01947 Gene

Additional Disease Information for LINC01947

No disorders were found for LINC01947 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01947 Gene

Publications for LINC01947 Gene

  1. Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions. (PMID: 22379998) McCormack M … Cavalleri GL (Pharmacogenomics 2012) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for LINC01947 Gene

Sources for LINC01947 Gene