Aliases for LINC01944 Gene

Subcategory (RNA class) for LINC01944 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01944 Gene

  • Long Intergenic Non-Protein Coding RNA 1944 2 3 5
  • LINC01944 2 170
  • NONHSAG042237 94
  • HSALNG0046629 169
  • CTB-54I1.1 3

External Ids for LINC01944 Gene

Previous GeneCards Identifiers for LINC01944 Gene

  • GC05M172558

Summaries for LINC01944 Gene

GeneCards Summary for LINC01944 Gene

LINC01944 (Long Intergenic Non-Protein Coding RNA 1944) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01944 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01944 Gene

Genomics for LINC01944 Gene

GeneHancer (GH) Regulatory Elements for LINC01944 Gene

Promoters and enhancers for LINC01944 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172555 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.6 1608 4.5 RAD21 SP1 MLLT1 PRDM1 PKNOX1 RXRA PRDM10 ZNF692 ZBTB17 YY1 LINC01944 RF00017-5112
GH05J172571 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -13.8 -13797 7.2 USF2 ZNF362 IKZF1 ZIC2 RFX1 RXRA ZNF512 ZNF316 MNT NFE2 SH3PXD2B NEURL1B UBTD2 CREBRF lnc-SH3PXD2B-2 LINC01944
GH05J172564 Enhancer 1 Ensembl ENCODE 0.4 -5.6 -5649 2.1 FOXA1 MLX NR2F6 ATF1 MIXL1 MNT SP1 CEBPG MYC PPARG NEURL1B LINC01944 lnc-SH3PXD2B-2
GH05J172553 Enhancer 0.3 Ensembl 0.6 +4.8 4802 1.2 ZSCAN5C OSR2 RF00017-5112 LINC01944
GH05J172548 Enhancer 0.5 Ensembl 0.4 +9.3 9302 3.4 ZIC2 SP1 USF1 NR2F2 RFX5 ZNF366 EBF1 YY1 RF00017-5112 LINC01944 RF00017-5111
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01944 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01944 Gene

Genomic Locations for LINC01944 Gene
chr5:172,543,403-172,559,202
(GRCh38/hg38)
Size:
15,800 bases
Orientation:
Minus strand
chr5:171,984,395-171,986,017
(GRCh37/hg19)
Size:
1,623 bases
Orientation:
Minus strand

Genomic View for LINC01944 Gene

Genes around LINC01944 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01944 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01944 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01944 Gene

Proteins for LINC01944 Gene

Post-translational modifications for LINC01944 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01944 Gene

Domains & Families for LINC01944 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01944 Gene

Function for LINC01944 Gene

Phenotypes From GWAS Catalog for LINC01944 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01944 Gene

Localization for LINC01944 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01944 Gene

Pathways & Interactions for LINC01944 Gene

PathCards logo

SuperPathways for LINC01944 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01944 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01944 Gene

Drugs & Compounds for LINC01944 Gene

No Compound Related Data Available

Transcripts for LINC01944 Gene

mRNA/cDNA for LINC01944 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01944 Gene

No ASD Table

Relevant External Links for LINC01944 Gene

GeneLoc Exon Structure for
LINC01944
ECgene alternative splicing isoforms for
LINC01944

Expression for LINC01944 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01944 Gene

Orthologs for LINC01944 Gene

Evolution for LINC01944 Gene

ENSEMBL:
Gene Tree for LINC01944 (if available)
TreeFam:
Gene Tree for LINC01944 (if available)

No data available for Orthologs for LINC01944 Gene

Paralogs for LINC01944 Gene

No data available for Paralogs for LINC01944 Gene

Variants for LINC01944 Gene

Sequence variations from dbSNP and Humsavar for LINC01944 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000213812 -- 172,559,811(-) G/A upstream_transcript_variant
rs1000567410 -- 172,559,576(-) C/T upstream_transcript_variant
rs1001877230 -- 172,560,548(-) T/C/G upstream_transcript_variant
rs1001997169 -- 172,558,379(-) G/A/T intron_variant
rs1002282941 -- 172,558,638(-) C/G/T intron_variant

Additional Variant Information for LINC01944 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01944

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01944 Gene

Disorders for LINC01944 Gene

Additional Disease Information for LINC01944

No disorders were found for LINC01944 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01944 Gene

Publications for LINC01944 Gene

No publications were found for LINC01944 Gene.

No data available for External Links for LINC01944 Gene

Products for LINC01944 Gene

Sources for LINC01944 Gene