Aliases for LINC01942 Gene

Subcategory (RNA class) for LINC01942 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01942 Gene

  • Long Intergenic Non-Protein Coding RNA 1942 2 3 5
  • LINC01942 2 170
  • NONHSAG042275 94
  • HSALNG0046716 169
  • CTB-43E15.2 3

External Ids for LINC01942 Gene

Summaries for LINC01942 Gene

GeneCards Summary for LINC01942 Gene

LINC01942 (Long Intergenic Non-Protein Coding RNA 1942) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01942 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01942 Gene

Genomics for LINC01942 Gene

GeneHancer (GH) Regulatory Elements for LINC01942 Gene

Promoters and enhancers for LINC01942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173688 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 766.5 +0.5 498 2.4 FOXA1 RBPJ NR2F6 ATF1 CREB1 MIXL1 HLF RAD21 POLR2A ZNF652 LINC01942 lnc-CPEB4-8
GH05J173668 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 7.4 -18.1 -18061 5.3 MLX SMARCE1 RBPJ ELF1 HLF L3MBTL2 POU5F1 ZKSCAN8 SP1 TFE3 lnc-CPEB4-9 BOD1 ENSG00000204758 STC2 CREBRF LINC01942 CPEB4
GH05J173680 Enhancer 0.9 Ensembl ENCODE 7.5 -8.0 -8017 2.8 SP1 CC2D1A ETV6 RELA ZKSCAN8 MAFK MLLT1 ZNF687 CREM ZBTB33 LINC01942 lnc-CPEB4-9
GH05J173640 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -45.5 -45464 7.5 ZBTB40 SREBF1 FOXA1 ZNF217 HLF L3MBTL2 RAD21 CSDE1 SP1 CEBPG LINC01863 BOD1 ENSG00000253244 LINC01942 lnc-BOD1-5
GH05J173660 Enhancer 0.3 Ensembl 5.8 -29.0 -29016 1.2 HNF4A RXRA LINC01942 LINC01863 lnc-CPEB4-9 lnc-BOD1-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01942 Gene

Genomic Locations for LINC01942 Gene
chr5:173,689,217-173,710,460
(GRCh38/hg38)
Size:
21,244 bases
Orientation:
Plus strand
chr5:173,116,462-173,132,852
(GRCh37/hg19)
Size:
16,391 bases
Orientation:
Plus strand

Genomic View for LINC01942 Gene

Genes around LINC01942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01942 Gene

Proteins for LINC01942 Gene

Post-translational modifications for LINC01942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01942 Gene

Domains & Families for LINC01942 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01942 Gene

Function for LINC01942 Gene

Phenotypes From GWAS Catalog for LINC01942 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01942 Gene

Localization for LINC01942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01942 Gene

Pathways & Interactions for LINC01942 Gene

PathCards logo

SuperPathways for LINC01942 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01942 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01942 Gene

Drugs & Compounds for LINC01942 Gene

No Compound Related Data Available

Transcripts for LINC01942 Gene

mRNA/cDNA for LINC01942 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(3) NONCODE transcripts :
(7) LNCipedia transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01942 Gene

No ASD Table

Relevant External Links for LINC01942 Gene

GeneLoc Exon Structure for
LINC01942
ECgene alternative splicing isoforms for
LINC01942

Expression for LINC01942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01942 Gene

Orthologs for LINC01942 Gene

Evolution for LINC01942 Gene

ENSEMBL:
Gene Tree for LINC01942 (if available)
TreeFam:
Gene Tree for LINC01942 (if available)

No data available for Orthologs for LINC01942 Gene

Paralogs for LINC01942 Gene

No data available for Paralogs for LINC01942 Gene

Variants for LINC01942 Gene

Sequence variations from dbSNP and Humsavar for LINC01942 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000218865 -- 173,705,538(+) T/A intron_variant
rs1000318109 -- 173,698,018(+) G/A intron_variant
rs1000660717 -- 173,703,487(+) C/T intron_variant
rs1000848361 -- 173,687,677(+) C/G upstream_transcript_variant
rs1000871672 -- 173,693,596(+) T/C intron_variant

Additional Variant Information for LINC01942 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01942

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01942 Gene

Disorders for LINC01942 Gene

Additional Disease Information for LINC01942

No disorders were found for LINC01942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01942 Gene

Publications for LINC01942 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LINC01942 Gene

Products for LINC01942 Gene

Sources for LINC01942 Gene