Aliases for LINC01940 Gene

Subcategory (RNA class) for LINC01940 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01940 Gene

  • Long Intergenic Non-Protein Coding RNA 1940 2 3 5
  • LINC01940 2 5 165
  • NONHSAG030956.2 91

External Ids for LINC01940 Gene

Summaries for LINC01940 Gene

GeneCards Summary for LINC01940 Gene

LINC01940 (Long Intergenic Non-Protein Coding RNA 1940) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01940 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01940 Gene

Genomics for LINC01940 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01940 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J238947 Enhancer 0.9 FANTOM5 Ensembl ENCODE 600.7 -0.6 -628 3.2 CEBPB RUNX3 FOS BHLHE40 JUND NFE2L2 SPI1 LINC01940 HSALNG0023476 TWIST2 HDAC4
GH02J238099 Enhancer 0.7 ENCODE 9.7 +849.3 849348 0.2 SP1 PRDM10 HNRNPUL1 POLR2A KLF9 SP2 EGR1 DEAF1 CHD2 USF1 ESPNL UBE2F TWIST2 RBM44 COL6A3 ENSG00000224132 LINC01940 lnc-ILKAP-4 SCLY UBE2F-SCLY
GH02J238943 Enhancer 0.4 Ensembl ENCODE 0.7 +4.7 4673 0.6 BHLHE40 LINC01940 lnc-TWIST2-2 TWIST2 HDAC4
GH02J238911 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.3 +34.0 33956 4.1 ZSCAN4 MNT USF1 FOS ZNF282 JUND GLIS1 NFATC1 HDAC2 CTCF TWIST2 lnc-TWIST2-2 LINC01940 HDAC4
GH02J238956 Enhancer 0.6 Ensembl ENCODE 0.4 -8.3 -8328 2.2 JUND FOS JUN RAD21 CTCF LINC01940 HSALNG0023476 TWIST2 HDAC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01940 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01940 Gene

Genomic Locations for LINC01940 Gene
chr2:238,919,082-238,947,973
(GRCh38/hg38)
Size:
28,892 bases
Orientation:
Minus strand
chr2:239,840,998-239,847,965
(GRCh37/hg19)
Size:
6,968 bases
Orientation:
Minus strand

Genomic View for LINC01940 Gene

Genes around LINC01940 on UCSC Golden Path with GeneCards custom track
LINC01940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01940 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01940 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01940 Gene

Proteins for LINC01940 Gene

Post-translational modifications for LINC01940 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01940 Gene

Domains & Families for LINC01940 Gene

Gene Families for LINC01940 Gene

genes like me logo Genes that share domains with LINC01940: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01940 Gene

Function for LINC01940 Gene

Phenotypes From GWAS Catalog for LINC01940 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01940 Gene

Localization for LINC01940 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01940 Gene

Pathways & Interactions for LINC01940 Gene

PathCards logo

SuperPathways for LINC01940 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01940 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01940 Gene

Drugs & Compounds for LINC01940 Gene

No Compound Related Data Available

Transcripts for LINC01940 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01940 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000004527D_9606 lncRNA 3489 3

Ensembl: ENST00000455228 (view in UCSC) ,

LNCipedia: LINC01940:13,

NONCODE: NONHSAT077770.2,

URS000075D487_9606 lncRNA 3489 2

HGNC: 52763,

RefSeq: NR_034162,

URS00008B677E_9606 lncRNA 3485 2

LNCipedia: LINC01940:14,

NONCODE: NONHSAT077769.2,

URS0000D5C7BE_9606 lncRNA 9206 1

LNCipedia: LINC01940:9,

URS0000D5B9A0_9606 lncRNA 9205 1

LNCipedia: LINC01940:10,

LINC01940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01940 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01940

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01940 Gene

No ASD Table

Relevant External Links for LINC01940 Gene

GeneLoc Exon Structure for
LINC01940

Expression for LINC01940 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01940

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01940 Gene

Orthologs for LINC01940 Gene

Evolution for LINC01940 Gene

ENSEMBL:
Gene Tree for LINC01940 (if available)
TreeFam:
Gene Tree for LINC01940 (if available)

No data available for Orthologs for LINC01940 Gene

Paralogs for LINC01940 Gene

No data available for Paralogs for LINC01940 Gene

Variants for LINC01940 Gene

Additional dbSNP identifiers (rs#s) for LINC01940 Gene

Additional Variant Information for LINC01940 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01940

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01940 Gene

Disorders for LINC01940 Gene

No disorders were found for LINC01940 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01940 Gene

Publications for LINC01940 Gene

No publications were found for LINC01940 Gene.

No data available for Mastermind for LINC01940 Gene

Products for LINC01940 Gene

Sources for LINC01940 Gene