Aliases for LINC01938 Gene

Subcategory (RNA class) for LINC01938 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01938 Gene

  • Long Intergenic Non-Protein Coding RNA 1938 2 3 5
  • LINC01938 2 5 165
  • NONHSAG042147.2 91
  • HSALNG0046360 164
  • CTB-181F24.1 3

External Ids for LINC01938 Gene

Summaries for LINC01938 Gene

GeneCards Summary for LINC01938 Gene

LINC01938 (Long Intergenic Non-Protein Coding RNA 1938) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01938 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01938 Gene

Genomics for LINC01938 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01938 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J165241 Promoter 0.3 EPDnew 631.4 +4.9 4941 0.1 LINC01938 piR-50852-132
GH05J165232 Enhancer 0.5 Ensembl ENCODE 8.6 +15.0 15012 3.8 NANOG POU5F1 LINC01938 piR-50852-132
GH05J165322 Enhancer 0.4 Ensembl 8 -75.2 -75188 0.2 GATA3 BHLHE40 JUND JUN LINC01938 L13713-192 lnc-NUDCD2-12
GH05J165201 Enhancer 0.5 Ensembl 7 +44.9 44913 0.8 CEBPB GATA3 JUND RCOR1 FOS GATA2 LINC01938 piR-50852-132
GH05J165029 Enhancer 0.5 Ensembl 4.7 +216.8 216812 1 CTCF RAD21 SMC3 SPI1 ATF2 MYC MAX TRIM22 LINC01938 piR-57461-196 piR-44253-018 ENSG00000241956 LOC102546299 LOC105377703
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01938 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01938 Gene

Genomic Locations for LINC01938 Gene
chr5:165,219,910-165,246,713
(GRCh38/hg38)
Size:
26,804 bases
Orientation:
Minus strand
chr5:164,647,583-164,668,758
(GRCh37/hg19)
Size:
21,176 bases
Orientation:
Minus strand

Genomic View for LINC01938 Gene

Genes around LINC01938 on UCSC Golden Path with GeneCards custom track
LINC01938 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01938 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01938 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01938 Gene

Proteins for LINC01938 Gene

Post-translational modifications for LINC01938 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01938 Gene

Domains & Families for LINC01938 Gene

Gene Families for LINC01938 Gene

genes like me logo Genes that share domains with LINC01938: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01938 Gene

Function for LINC01938 Gene

Phenotypes From GWAS Catalog for LINC01938 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01938 Gene

Localization for LINC01938 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01938 Gene

Pathways & Interactions for LINC01938 Gene

PathCards logo

SuperPathways for LINC01938 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01938 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01938 Gene

Drugs & Compounds for LINC01938 Gene

No Compound Related Data Available

Transcripts for LINC01938 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01938 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DB46E_9606 lncRNA 1864 5

HGNC: 52761,

Ensembl: ENST00000521341 (view in UCSC) ,

LncBook: HSALNT0097239,

LNCipedia: LINC01938:16,

NONCODE: NONHSAT104946.2,

URS0000EF1E14_9606 lncRNA 1383 1

Ensembl: ENST00000659460 (view in UCSC) ,

URS0000EF077D_9606 lncRNA 1267 1

Ensembl: ENST00000655559 (view in UCSC) ,

URS0000EF53B0_9606 lncRNA 1265 1

Ensembl: ENST00000670497 (view in UCSC) ,

URS0000EEC63D_9606 lncRNA 1216 1

Ensembl: ENST00000523538 (view in UCSC) ,

LINC01938 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01938 Gene

No ASD Table

Relevant External Links for LINC01938 Gene

GeneLoc Exon Structure for
LINC01938

No data available for mRNA/cDNA for LINC01938 Gene

Expression for LINC01938 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01938 Gene

Orthologs for LINC01938 Gene

Evolution for LINC01938 Gene

ENSEMBL:
Gene Tree for LINC01938 (if available)
TreeFam:
Gene Tree for LINC01938 (if available)

No data available for Orthologs for LINC01938 Gene

Paralogs for LINC01938 Gene

No data available for Paralogs for LINC01938 Gene

Variants for LINC01938 Gene

Additional dbSNP identifiers (rs#s) for LINC01938 Gene

Additional Variant Information for LINC01938 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01938

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01938 Gene

Disorders for LINC01938 Gene

Additional Disease Information for LINC01938

No disorders were found for LINC01938 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01938 Gene

Publications for LINC01938 Gene

No publications were found for LINC01938 Gene.

No data available for Mastermind for LINC01938 Gene

Products for LINC01938 Gene

Sources for LINC01938 Gene