Aliases for LINC01936 Gene

Subcategory (RNA class) for LINC01936 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01936 Gene

  • Long Intergenic Non-Protein Coding RNA 1936 2 3 5
  • LINC01936 2 170
  • NONHSAG027390 94
  • HSALNG0013967 169

External Ids for LINC01936 Gene

Previous GeneCards Identifiers for LINC01936 Gene

  • GC02P030347

Summaries for LINC01936 Gene

GeneCards Summary for LINC01936 Gene

LINC01936 (Long Intergenic Non-Protein Coding RNA 1936) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01936 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01936 Gene

Genomics for LINC01936 Gene

GeneHancer (GH) Regulatory Elements for LINC01936 Gene

Promoters and enhancers for LINC01936 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J030330 Enhancer 0.3 Ensembl 750.6 -1.7 -1749 0.4 MNT LINC01936 NONHSAG027389.2
GH02J030250 Enhancer 1.2 ENCODE dbSUPER 9.9 -77.0 -77046 10.3 SIN3A ZBTB40 SMARCE1 RUNX1 CC2D1A ELF1 L3MBTL2 DACH1 TEAD4 NFIB ENSG00000233862 LBH LINC01936 lnc-YPEL5-5 HSALNG0013963
GH02J030407 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 5.5 +78.2 78196 7.7 SP1 MAFK CBFA2T2 SMARCA4 POLR2A NFE2L2 ZNF316 NFE2 CTBP1 MAFG LBH SNORA10B LCLAT1 LINC01936 YPEL5 ENSG00000280154 RF01061-082
GH02J030359 Enhancer 0.7 Ensembl ENCODE 6.5 +28.7 28665 5.4 ZBTB40 CBFA2T2 ZIC2 ETV6 ZBTB11 RAD51 GABPA POLR2A FOS MAX LINC01936 ENSG00000287658 lnc-CAPN13-2
GH02J030364 Enhancer 0.6 Ensembl ENCODE 6.8 +34.5 34513 4.1 EED RUNX3 NR2F2 LINC01936 ENSG00000287658 lnc-CAPN13-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01936 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01936 Gene

Genomic Locations for LINC01936 Gene
chr2:30,332,550-30,361,619
(GRCh38/hg38)
Size:
29,070 bases
Orientation:
Plus strand

Genomic View for LINC01936 Gene

Genes around LINC01936 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01936 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01936 Gene

Proteins for LINC01936 Gene

Post-translational modifications for LINC01936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01936 Gene

Domains & Families for LINC01936 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01936 Gene

Function for LINC01936 Gene

Phenotypes From GWAS Catalog for LINC01936 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01936 Gene

Localization for LINC01936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01936 Gene

Pathways & Interactions for LINC01936 Gene

PathCards logo

SuperPathways for LINC01936 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01936 Gene

Drugs & Compounds for LINC01936 Gene

No Compound Related Data Available

Transcripts for LINC01936 Gene

mRNA/cDNA for LINC01936 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(14) RNACentral transcripts :
(14) LNCipedia transcripts :
(4) LncBook transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01936 Gene

No ASD Table

Relevant External Links for LINC01936 Gene

GeneLoc Exon Structure for
LINC01936
ECgene alternative splicing isoforms for
LINC01936

Expression for LINC01936 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01936 Gene

Orthologs for LINC01936 Gene

Evolution for LINC01936 Gene

ENSEMBL:
Gene Tree for LINC01936 (if available)
TreeFam:
Gene Tree for LINC01936 (if available)

No data available for Orthologs for LINC01936 Gene

Paralogs for LINC01936 Gene

No data available for Paralogs for LINC01936 Gene

Variants for LINC01936 Gene

Sequence variations from dbSNP and Humsavar for LINC01936 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000003809 -- 30,347,657(+) A/G intron_variant
rs1000492161 -- 30,348,350(+) C/T intron_variant
rs1001464550 -- 30,349,212(+) C/A/T intron_variant
rs1001495505 -- 30,349,544(+) C/T intron_variant
rs1001628547 -- 30,348,078(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01936 Gene

Variant ID Type Subtype PubMed ID
nsv833648 CNV gain 17160897

Additional Variant Information for LINC01936 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01936

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01936 Gene

Disorders for LINC01936 Gene

Additional Disease Information for LINC01936

No disorders were found for LINC01936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01936 Gene

Publications for LINC01936 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LINC01936 Gene

Products for LINC01936 Gene

Sources for LINC01936 Gene