Aliases for LINC01929 Gene

Data sources for LINC01929 Gene:

Subcategory (RNA class) for LINC01929 Gene

lncRNA

Aliases for LINC01929 Gene

External Ids for LINC01929 Gene

Summaries for LINC01929 Gene

GeneCards Summary for LINC01929 Gene

LINC01929 (Long Intergenic Non-Protein Coding RNA 1929) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01929 include Thyroid Gland Papillary Carcinoma and Amebiasis.

Additional gene information for LINC01929 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01929 Gene

Genomics for LINC01929 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01929 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055119 Promoter/Enhancer 1.2 EPDnew ENCODE 260.6 +4.8 4765 0.1 IKZF1 ARNT VEZF1 NBN TAL1 SKIL ZNF316 FOSL1 CBX1 NFE2 LINC01929 HSALNG0121675 CCDC68 TCF4
GH18J055581 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 -461.5 -461479 9.6 ZSCAN16 TBP ZBTB10 MNT IKZF1 SMAD5 ETS1 POLR2A ZEB1 ZNF610 TCF4 5MWI_A-079 RPL21P126 LINC01929 LINC01415 ENSG00000267284 LOC105372126 lnc-CCDC68-2 CCDC68
GH18J055096 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 8 +26.8 26819 2.6 CTCF CEBPB REST VEZF1 RXRA RAD21 ZBTB5 RFX5 YY1 SMC3 LINC01929 HSALNG0121675 LOC105372125 CCDC68 TCF4
GH18J055100 Enhancer 0.7 Ensembl ENCODE 7.8 +23.3 23306 2 CEBPB EP300 RFX5 STAT3 JUND ZNF362 ATF2 HSALNG0121675 LINC01929 LOC105372125 CCDC68 TCF4
GH18J055135 Enhancer 0.4 ENCODE 6.6 -12.2 -12158 1 JUND ZNF133 SPI1 EP300 LINC01929 RNA5SP459 CCDC68 TCF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01929 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01929 Gene

Latest Assembly
chr18:55,105,658-55,124,307
(GRCh38/hg38)
Size:
18,650 bases
Orientation:
Minus strand

Previous Assembly
chr18:52,773,135-52,791,537
(GRCh37/hg19 by Entrez Gene)
Size:
18,403 bases
Orientation:
Minus strand

chr18:52,773,135-52,791,537
(GRCh37/hg19 by Ensembl)
Size:
18,403 bases
Orientation:
Minus strand

Genomic View for LINC01929 Gene

Genes around LINC01929 on UCSC Golden Path with GeneCards custom track
LINC01929 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01929 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01929 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01929 Gene

Proteins for LINC01929 Gene

Post-translational modifications for LINC01929 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01929 Gene

Domains & Families for LINC01929 Gene

Gene Families for LINC01929 Gene

genes like me logo Genes that share domains with LINC01929: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01929 Gene

Function for LINC01929 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01929 Gene

Localization for LINC01929 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01929 Gene

Pathways & Interactions for LINC01929 Gene

PathCards logo

SuperPathways for LINC01929 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01929 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01929 Gene

Drugs & Compounds for LINC01929 Gene

No Compound Related Data Available

Transcripts for LINC01929 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01929 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000058C591_9606 lncRNA 3067 5

RefSeq: NR_110743,

Ensembl: ENST00000589125 (view in UCSC) ,

LncBook: HSALNT0251493,

LNCipedia: LINC01929:6,

NONCODE: NONHSAT059362.2,

URS0000EEC305_9606 lncRNA 1186 1

Ensembl: ENST00000592405 (view in UCSC) ,

URS0000EED6AB_9606 lncRNA 948 1

Ensembl: ENST00000657832 (view in UCSC) ,

URS00004112DA_9606 lncRNA 579 3

LncBook: HSALNT0251494,

LNCipedia: LINC01929:7,

NONCODE: NONHSAT059363.2,

URS00009C370D_9606 lncRNA 536 2

LncBook: HSALNT0251495,

NONCODE: NONHSAT178504.1,

LINC01929 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01929 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01929 Gene

No ASD Table

Relevant External Links for LINC01929 Gene

GeneLoc Exon Structure for
LINC01929

Expression for LINC01929 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01929 Gene

Orthologs for LINC01929 Gene

Evolution for LINC01929 Gene

ENSEMBL:
Gene Tree for LINC01929 (if available)
TreeFam:
Gene Tree for LINC01929 (if available)

No data available for Orthologs for LINC01929 Gene

Paralogs for LINC01929 Gene

No data available for Paralogs for LINC01929 Gene

Variants for LINC01929 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01929 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01929 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01929

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01929 Gene

Disorders for LINC01929 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01929 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
thyroid gland papillary carcinoma
  • papillary carcinoma of the thyroid gland
amebiasis
  • amoebiasis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01929

genes like me logo Genes that share disorders with LINC01929: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01929 Gene

Publications for LINC01929 Gene

  1. RNA-sequencing investigation identifies an effective risk score generated by three novel lncRNAs for the survival of papillary thyroid cancer patients. (PMID: 29088774) Luo YH … Chen G (Oncotarget 2017) 74
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01929 Gene

Sources for LINC01929 Gene