Aliases for LINC01929 Gene

Subcategory (RNA class) for LINC01929 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01929 Gene

  • Long Intergenic Non-Protein Coding RNA 1929 2 3 5
  • LINC01929 2 170
  • HSALNG0121679 169
  • NONHSAG023906 94
  • CTD-2171N6.1 3

External Ids for LINC01929 Gene

Summaries for LINC01929 Gene

GeneCards Summary for LINC01929 Gene

LINC01929 (Long Intergenic Non-Protein Coding RNA 1929) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01929 include Thyroid Cancer, Nonmedullary, 1.

Additional gene information for LINC01929 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01929 Gene

Genomics for LINC01929 Gene

GeneHancer (GH) Regulatory Elements for LINC01929 Gene

Promoters and enhancers for LINC01929 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055581 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 -461.5 -461478 9.6 FOXK2 ZNF785 ZBTB40 RUNX1 ZNF362 ELF1 L3MBTL2 RAD21 TEAD4 POLR2A TCF4 5MWI_A-087 RPL21P126 LINC01929 LINC01415 ENSG00000267284 LOC105372126 lnc-RAB27B-12 lnc-CCDC68-2
GH18J055096 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 8 +26.8 26765 2.5 USF2 MAX RAD21 SP1 CTCF SP7 ZSCAN21 REST TCF7L2 PRDM10 POLI LINC01929 HSALNG0121675
GH18J055119 Enhancer 0.8 ENCODE 10.6 +4.8 4772 0.1 SMARCE1 CC2D1A TEAD4 ZNF148 CBFA2T2 SMARCA4 TRIM24 MTA1 EGR1 IKZF1 LINC01929 HSALNG0121675
GH18J055100 Enhancer 0.8 Ensembl ENCODE 7.8 +22.8 22806 3 ZNF362 PRDM10 CEBPB JUN RCOR1 JUND SP1 EP300 OSR2 RFX5 LINC01929 HSALNG0121675
GH18J055135 Enhancer 0.5 Ensembl ENCODE 6.6 -12.5 -12485 1.6 ZNF133 JUND POLI LINC01929 RNA5SP459
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01929 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01929 Gene

Genomic Locations for LINC01929 Gene
chr18:55,105,904-55,124,307
(GRCh38/hg38)
Size:
18,404 bases
Orientation:
Minus strand
chr18:52,773,135-52,791,537
(GRCh37/hg19)
Size:
18,403 bases
Orientation:
Minus strand

Genomic View for LINC01929 Gene

Genes around LINC01929 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01929 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01929 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01929 Gene

Proteins for LINC01929 Gene

Post-translational modifications for LINC01929 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01929 Gene

Domains & Families for LINC01929 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01929 Gene

Function for LINC01929 Gene

Phenotypes From GWAS Catalog for LINC01929 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01929 Gene

Localization for LINC01929 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01929 Gene

Pathways & Interactions for LINC01929 Gene

PathCards logo

SuperPathways for LINC01929 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01929 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01929 Gene

Drugs & Compounds for LINC01929 Gene

No Compound Related Data Available

Transcripts for LINC01929 Gene

mRNA/cDNA for LINC01929 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01929 Gene

No ASD Table

Relevant External Links for LINC01929 Gene

GeneLoc Exon Structure for
LINC01929
ECgene alternative splicing isoforms for
LINC01929

Expression for LINC01929 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01929 Gene

Orthologs for LINC01929 Gene

Evolution for LINC01929 Gene

ENSEMBL:
Gene Tree for LINC01929 (if available)
TreeFam:
Gene Tree for LINC01929 (if available)

No data available for Orthologs for LINC01929 Gene

Paralogs for LINC01929 Gene

No data available for Paralogs for LINC01929 Gene

Variants for LINC01929 Gene

Sequence variations from dbSNP and Humsavar for LINC01929 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000017805 -- 55,106,706(-) C/A non_coding_transcript_variant
rs1000209540 -- 55,122,598(-) CACAC/CAC intron_variant
rs1000242121 -- 55,122,380(-) A/C/T intron_variant
rs1000377238 -- 55,125,114(-) T/C upstream_transcript_variant
rs1000817482 -- 55,120,921(-) C/G intron_variant

Additional Variant Information for LINC01929 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01929

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01929 Gene

Disorders for LINC01929 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01929 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01929

genes like me logo Genes that share disorders with LINC01929: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01929 Gene

Publications for LINC01929 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LINC01929 Gene

Sources for LINC01929 Gene