Aliases for LINC01927 Gene

Data sources for LINC01927 Gene:

Subcategory (RNA class) for LINC01927 Gene

lncRNA

Aliases for LINC01927 Gene

External Ids for LINC01927 Gene

Summaries for LINC01927 Gene

GeneCards Summary for LINC01927 Gene

LINC01927 (Long Intergenic Non-Protein Coding RNA 1927) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01927 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01927 Gene

Genomics for LINC01927 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076638 Enhancer 0.3 Ensembl 268.8 +0.6 562 0.8 SPI1 LINC01927 piR-38580-132 LINC00683 LINC00908 ZNF516 ZNF236
GH18J076658 Enhancer 0.8 FANTOM5 Ensembl 15.9 -18.5 -18472 2.1 CTCF SPI1 GATA3 MAZ GLIS1 GATA2 TRIM28 RAD21 PATZ1 ZNF143 HSALNG0122582 ZNF516 LINC01927 LOC107985151 L13714-227 LINC00683 LINC00908 ZNF236
GH18J076632 Enhancer 0.4 Ensembl 11.2 +6.0 5962 1.6 RAD21 KDM1A ZNF10 LINC01927 piR-38580-132 LINC00683 LINC00908 ZNF516 ZNF236
GH18J076625 Enhancer 0.3 Ensembl 8.4 +12.7 12662 1.4 ZNF558 piR-31937-095 ZNF516 LINC01927 piR-33913 LINC00683 LINC00908 ZNF236
GH18J076668 Enhancer 0.3 Ensembl 5.4 -29.2 -29238 0.4 CTCF piR-41946 LINC01927 LOC107985151 LINC00683 LINC00908 ZNF236 ZNF516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01927 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01927 Gene

Latest Assembly
chr18:76,622,136-76,639,563
(GRCh38/hg38)
Size:
17,428 bases
Orientation:
Minus strand

Previous Assembly
chr18:74,334,738-74,350,968
(GRCh37/hg19 by Entrez Gene)
Size:
16,231 bases
Orientation:
Minus strand

chr18:74,334,963-74,350,968
(GRCh37/hg19 by Ensembl)
Size:
16,006 bases
Orientation:
Minus strand

Genomic View for LINC01927 Gene

Genes around LINC01927 on UCSC Golden Path with GeneCards custom track
LINC01927 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01927 Gene

Proteins for LINC01927 Gene

Post-translational modifications for LINC01927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01927 Gene

Domains & Families for LINC01927 Gene

Gene Families for LINC01927 Gene

genes like me logo Genes that share domains with LINC01927: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01927 Gene

Function for LINC01927 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01927 Gene

Localization for LINC01927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01927 Gene

Pathways & Interactions for LINC01927 Gene

PathCards logo

SuperPathways for LINC01927 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01927 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01927 Gene

Drugs & Compounds for LINC01927 Gene

No Compound Related Data Available

Transcripts for LINC01927 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01927 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F076_9606 lncRNA 942 2

RefSeq: NR_110784,

LNCipedia: LINC01927:11,

URS0000EECAAB_9606 lncRNA 1582 1

Ensembl: ENST00000582231 (view in UCSC) ,

URS0000EF1857_9606 lncRNA 1524 1

Ensembl: ENST00000658908 (view in UCSC) ,

URS0000EF1B12_9606 lncRNA 1276 1

Ensembl: ENST00000658993 (view in UCSC) ,

URS0000EF582D_9606 lncRNA 797 1

Ensembl: ENST00000661118 (view in UCSC) ,

LINC01927 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01927 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01927 Gene

No ASD Table

Relevant External Links for LINC01927 Gene

GeneLoc Exon Structure for
LINC01927

Expression for LINC01927 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01927 Gene

Orthologs for LINC01927 Gene

Evolution for LINC01927 Gene

ENSEMBL:
Gene Tree for LINC01927 (if available)
TreeFam:
Gene Tree for LINC01927 (if available)

No data available for Orthologs for LINC01927 Gene

Paralogs for LINC01927 Gene

No data available for Paralogs for LINC01927 Gene

Variants for LINC01927 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01927 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01927 Gene

Variant ID Type Subtype PubMed ID
dgv210e215 CNV deletion 23714750
esv1940065 CNV deletion 18987734
esv2435504 CNV deletion 19546169
esv2658969 CNV deletion 23128226
esv2678713 CNV deletion 23128226
esv2717388 CNV deletion 23290073
esv2717408 CNV deletion 23290073
esv3109346 CNV deletion 24192839
esv3643179 CNV loss 21293372
esv3643181 CNV loss 21293372
esv990796 CNV loss 20482838
nsv1063632 CNV gain 25217958
nsv821479 CNV deletion 20802225
nsv828317 CNV gain+loss 20364138
nsv833697 CNV loss 17160897

Additional Variant Information for LINC01927 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01927

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01927 Gene

Disorders for LINC01927 Gene

Additional Disease Information for LINC01927

No disorders were found for LINC01927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01927 Gene

Publications for LINC01927 Gene

No publications were found for LINC01927 Gene.

Products for LINC01927 Gene

Sources for LINC01927 Gene