Aliases for LINC01924 Gene

Data sources for LINC01924 Gene:

Subcategory (RNA class) for LINC01924 Gene

lncRNA

Aliases for LINC01924 Gene

External Ids for LINC01924 Gene

Previous GeneCards Identifiers for LINC01924 Gene

  • GC18P064105

Summaries for LINC01924 Gene

GeneCards Summary for LINC01924 Gene

LINC01924 (Long Intergenic Non-Protein Coding RNA 1924) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01924 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01924 Gene

Genomics for LINC01924 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01924 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J064054 Enhancer 0.3 Ensembl 0.4 +13.3 13346 0.2 HNF4A SP1 piR-50129-117 LINC01924 RPL12P39 SERPINB8
GH18J064085 Enhancer 0.4 Ensembl 0.3 +43.4 43446 0.8 JUND ATF2 CREB1 ATF7 RPL12P39 LINC01924 LINC00305 SERPINB8
GH18J064111 Enhancer 0.6 Ensembl ENCODE 0.2 +69.6 69646 1.2 SPI1 POLR2A DPF2 LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064116 Enhancer 0.5 Ensembl ENCODE 0.2 +75.6 75646 2.4 CEBPB POU5F1 LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064134 Enhancer 0.6 Ensembl ENCODE 0.2 +92.6 92646 2.4 EP300 NFE2 NFE2L2 MAFF CREB1 LINC00305 RPL12P39 LINC01924 SERPINB8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01924 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01924 Gene

Latest Assembly
chr18:64,041,555-64,502,547
(GRCh38/hg38)
Size:
460,993 bases
Orientation:
Plus strand

Previous Assembly
chr18:61,771,325-62,090,836
(GRCh37/hg19 by Entrez Gene)
Size:
319,512 bases
Orientation:
Plus strand

chr18:61,771,325-62,090,836
(GRCh37/hg19 by Ensembl)
Size:
319,512 bases
Orientation:
Plus strand

Genomic View for LINC01924 Gene

Genes around LINC01924 on UCSC Golden Path with GeneCards custom track
LINC01924 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01924 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01924 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01924 Gene

Proteins for LINC01924 Gene

Post-translational modifications for LINC01924 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01924 Gene

Domains & Families for LINC01924 Gene

Gene Families for LINC01924 Gene

genes like me logo Genes that share domains with LINC01924: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01924 Gene

Function for LINC01924 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01924 Gene

Localization for LINC01924 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01924 Gene

Pathways & Interactions for LINC01924 Gene

PathCards logo

SuperPathways for LINC01924 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01924 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01924 Gene

Drugs & Compounds for LINC01924 Gene

No Compound Related Data Available

Transcripts for LINC01924 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01924 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000504A1A_9606 lncRNA 1722 4

RefSeq: NR_033881,

Ensembl: ENST00000589376 (view in UCSC) ,

LNCipedia: LINC01924:4,

NONCODE: NONHSAT059685.2,

URS00005458AD_9606 lncRNA 385 4

Ensembl: ENST00000452004 (view in UCSC) ,

LncBook: HSALNT0252400,

LNCipedia: lnc-SERPINB8-2:3,

NONCODE: NONHSAT059689.2,

URS0000DB9F5B_9606 lncRNA 1417 1

Ensembl: ENST00000649298 (view in UCSC) ,

URS0000EEB534_9606 lncRNA 769 1

Ensembl: ENST00000657802 (view in UCSC) ,

URS0000EEBE7E_9606 lncRNA 725 1

Ensembl: ENST00000662844 (view in UCSC) ,

LINC01924 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01924 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01924 Gene

No ASD Table

Relevant External Links for LINC01924 Gene

GeneLoc Exon Structure for
LINC01924

Expression for LINC01924 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01924

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01924 Gene

Orthologs for LINC01924 Gene

Evolution for LINC01924 Gene

ENSEMBL:
Gene Tree for LINC01924 (if available)
TreeFam:
Gene Tree for LINC01924 (if available)

No data available for Orthologs for LINC01924 Gene

Paralogs for LINC01924 Gene

No data available for Paralogs for LINC01924 Gene

Variants for LINC01924 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01924 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01924 Gene

Variant ID Type Subtype PubMed ID
dgv3377n100 CNV gain 25217958
dgv5969n54 CNV loss 21841781
dgv623e214 CNV loss 21293372
esv21739 CNV gain 19812545
esv23334 CNV loss 19812545
esv2422190 CNV duplication 17116639
esv2670290 CNV deletion 23128226
esv2717208 CNV deletion 23290073
esv2717209 CNV deletion 23290073
esv2717210 CNV deletion 23290073
esv2717211 CNV deletion 23290073
esv2717212 CNV deletion 23290073
esv2762855 CNV gain 21179565
esv3216398 CNV deletion 24192839
esv3555512 CNV deletion 23714750
esv3555513 CNV deletion 23714750
esv3583110 CNV loss 25503493
esv3583111 CNV loss 25503493
esv3583112 CNV loss 25503493
esv3642789 CNV gain 21293372
esv3642793 CNV gain 21293372
esv3642794 CNV loss 21293372
esv3642795 CNV loss 21293372
esv3642796 CNV gain 21293372
esv3642797 CNV loss 21293372
esv3642798 CNV loss 21293372
esv3642800 CNV loss 21293372
esv991229 CNV deletion 20482838
nsv1066552 CNV gain 25217958
nsv1067311 CNV loss 25217958
nsv1131373 CNV deletion 24896259
nsv1134724 CNV deletion 24896259
nsv131608 CNV deletion 16902084
nsv527008 CNV loss 19592680
nsv577099 CNV loss 21841781
nsv577106 CNV loss 21841781
nsv828260 CNV loss 20364138

Additional Variant Information for LINC01924 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01924

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01924 Gene

Disorders for LINC01924 Gene

Additional Disease Information for LINC01924

No disorders were found for LINC01924 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01924 Gene

Publications for LINC01924 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
  2. Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. (PMID: 22837378) Wilk JB … Stricker BH (American journal of respiratory and critical care medicine 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01924 Gene

Sources for LINC01924 Gene