Aliases for LINC01921 Gene

Data sources for LINC01921 Gene:

RNA type for LINC01921 Gene

lncRNA

Aliases for LINC01921 Gene

External Ids for LINC01921 Gene

Previous GeneCards Identifiers for LINC01921 Gene

  • GC02P216870

Summaries for LINC01921 Gene

GeneCards Summary for LINC01921 Gene

LINC01921 (Long Intergenic Non-Protein Coding RNA 1921) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01921 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01921 Gene

Genomics for LINC01921 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01921 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01921 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01921 Gene

Latest Assembly
chr2:216,859,948-216,871,643
(GRCh38/hg38)
Size:
11,696 bases
Orientation:
Plus strand

Previous Assembly
chr2:217,735,495-217,736,362
(GRCh37/hg19 by Entrez Gene)
Size:
868 bases
Orientation:
Plus strand

chr2:217,735,495-217,736,362
(GRCh37/hg19 by Ensembl)
Size:
868 bases
Orientation:
Plus strand

Genomic View for LINC01921 Gene

Genes around LINC01921 on UCSC Golden Path with GeneCards custom track
LINC01921 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01921 Gene

Proteins for LINC01921 Gene

Post-translational modifications for LINC01921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01921 Gene

Domains & Families for LINC01921 Gene

Gene Families for LINC01921 Gene

genes like me logo Genes that share domains with LINC01921: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01921 Gene

Function for LINC01921 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01921 Gene

Localization for LINC01921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01921 Gene

Pathways & Interactions for LINC01921 Gene

PathCards logo

SuperPathways for LINC01921 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01921 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01921 Gene

Drugs & Compounds for LINC01921 Gene

No Compound Related Data Available

Transcripts for LINC01921 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01921 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF62B1_9606 lncRNA 581 1

Ensembl: ENST00000456163 (view in UCSC) ,

URS000081211A_9606 lncRNA 393 1

RefSeq: NR_130782,

URS00007C8D89_9606 lncRNA 393 2

LncBook: HSALNT0047065,

LNCipedia: LINC01921:3,

LINC01921 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01921 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01921 Gene

No ASD Table

Relevant External Links for LINC01921 Gene

GeneLoc Exon Structure for
LINC01921

Expression for LINC01921 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01921

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01921 Gene

Orthologs for LINC01921 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01921 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 98 (a)
OneToOne
Species where no ortholog for LINC01921 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01921 Gene

ENSEMBL:
Gene Tree for LINC01921 (if available)
TreeFam:
Gene Tree for LINC01921 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01921

Paralogs for LINC01921 Gene

No data available for Paralogs for LINC01921 Gene

Variants for LINC01921 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01921 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01921 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01921
Leiden Open Variation Database (LOVD)
LINC01921

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01921 Gene

Disorders for LINC01921 Gene

Additional Disease Information for LINC01921

No disorders were found for LINC01921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01921 Gene

Publications for LINC01921 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01921 Gene

Products for LINC01921 Gene

Sources for LINC01921 Gene