Aliases for LINC01919 Gene

Data sources for LINC01919 Gene:

Subcategory (RNA class) for LINC01919 Gene

lncRNA

Aliases for LINC01919 Gene

External Ids for LINC01919 Gene

Summaries for LINC01919 Gene

GeneCards Summary for LINC01919 Gene

LINC01919 (Long Intergenic Non-Protein Coding RNA 1919) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01919 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01919 Gene

Genomics for LINC01919 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01919 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J053566 Enhancer 0.7 Ensembl ENCODE 250.7 -0.7 -696 1.8 CTCF SMC3 RAD21 ESRRA POU5F1 NANOG NR2F2 LINC01919 LINC01917 piR-33432-256 MBD2
GH18J053578 Enhancer 0.3 Ensembl 0.4 +11.2 11204 0.8 POU5F1 piR-50437-311 LINC01919 piR-60246-079 LINC01917 MBD2
GH18J053541 Enhancer 0.3 Ensembl 0.3 -26.0 -25996 1.2 ATF7 piR-33432-256 LINC01919 LINC01917 MBD2
GH18J053547 Enhancer 0.2 Ensembl 0.3 -20.5 -20496 0.2 LINC01919 piR-33432-256 LINC01917 MBD2
GH18J053544 Enhancer 0.2 Ensembl 0.3 -23.1 -23096 0.6 LINC01919 piR-33432-256 LINC01917 MBD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01919 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01919 Gene

Latest Assembly
chr18:53,568,197-53,629,990
(GRCh38/hg38)
Size:
61,794 bases
Orientation:
Plus strand

Previous Assembly
chr18:51,094,817-51,124,221
(GRCh37/hg19 by Entrez Gene)
Size:
29,405 bases
Orientation:
Plus strand

chr18:51,094,817-51,124,221
(GRCh37/hg19 by Ensembl)
Size:
29,405 bases
Orientation:
Plus strand

Genomic View for LINC01919 Gene

Genes around LINC01919 on UCSC Golden Path with GeneCards custom track
LINC01919 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01919 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01919 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01919 Gene

Proteins for LINC01919 Gene

Post-translational modifications for LINC01919 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01919 Gene

Domains & Families for LINC01919 Gene

Gene Families for LINC01919 Gene

genes like me logo Genes that share domains with LINC01919: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01919 Gene

Function for LINC01919 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01919 Gene

Localization for LINC01919 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01919 Gene

Pathways & Interactions for LINC01919 Gene

PathCards logo

SuperPathways for LINC01919 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01919 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01919 Gene

Drugs & Compounds for LINC01919 Gene

No Compound Related Data Available

Transcripts for LINC01919 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01919 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CF244_9606 lncRNA 568 5

RefSeq: NR_110798,

Ensembl: ENST00000578610 (view in UCSC) ,

LncBook: HSALNT0251381,

LNCipedia: LINC01919:12,

NONCODE: NONHSAT059331.2,

URS0000EEC3D3_9606 lncRNA 1683 1

Ensembl: ENST00000579506 (view in UCSC) ,

URS0000EF3471_9606 lncRNA 1290 1

Ensembl: ENST00000655896 (view in UCSC) ,

URS0000EF6DCC_9606 lncRNA 1087 1

Ensembl: ENST00000669727 (view in UCSC) ,

URS0000EED7DC_9606 lncRNA 942 1

Ensembl: ENST00000663332 (view in UCSC) ,

LINC01919 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01919 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01919 Gene

No ASD Table

Relevant External Links for LINC01919 Gene

GeneLoc Exon Structure for
LINC01919

Expression for LINC01919 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01919 Gene

Orthologs for LINC01919 Gene

Evolution for LINC01919 Gene

ENSEMBL:
Gene Tree for LINC01919 (if available)
TreeFam:
Gene Tree for LINC01919 (if available)

No data available for Orthologs for LINC01919 Gene

Paralogs for LINC01919 Gene

No data available for Paralogs for LINC01919 Gene

Variants for LINC01919 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01919 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01919 Gene

Variant ID Type Subtype PubMed ID
esv2717119 CNV deletion 23290073
nsv576940 CNV loss 21841781
nsv833658 CNV gain 17160897

Additional Variant Information for LINC01919 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01919

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01919 Gene

Disorders for LINC01919 Gene

Additional Disease Information for LINC01919

No disorders were found for LINC01919 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01919 Gene

Publications for LINC01919 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC01919 Gene

Products for LINC01919 Gene

Sources for LINC01919 Gene