Aliases for LINC01917 Gene

Data sources for LINC01917 Gene:

Subcategory (RNA class) for LINC01917 Gene

lncRNA

Aliases for LINC01917 Gene

External Ids for LINC01917 Gene

Previous GeneCards Identifiers for LINC01917 Gene

  • GC18M053581

Summaries for LINC01917 Gene

GeneCards Summary for LINC01917 Gene

LINC01917 (Long Intergenic Non-Protein Coding RNA 1917) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01917 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01917 Gene

Genomics for LINC01917 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01917 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J053566 Enhancer 0.7 Ensembl ENCODE 4.7 +331.8 331765 1.8 CTCF SMC3 RAD21 ESRRA POU5F1 NANOG NR2F2 LINC01919 LINC01917 piR-33432-256 MBD2
GH18J053603 Enhancer 0.2 Ensembl 4 +296.0 295965 0.6 LINC01917 RPL29P32 lnc-MBD2-5 piR-53338-068 LINC01919 MBD2
GH18J053795 Enhancer 0.8 Ensembl ENCODE 0.1 +103.0 102987 1.3 BCL11A CEBPB IRF4 EP300 JUND FOSL1 NFE2 ATF1 BATF ZNF589 HSALNG0121616-001 HSALNG0121618 LINC01917 MBD2
GH18J053851 Enhancer 0.3 Ensembl 0.3 +47.9 47865 1.2 NANOG EZH2 HSALNG0121618 LINC01917 HSALNG0121616-001 MBD2
GH18J053797 Enhancer 0.3 Ensembl ENCODE 0.1 +100.9 100913 1 HSALNG0121616-001 HSALNG0121618 LINC01917 MBD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01917 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01917 Gene

Latest Assembly
chr18:53,480,646-53,899,266
(GRCh38/hg38)
Size:
418,621 bases
Orientation:
Minus strand

Previous Assembly
chr18:51,105,993-51,107,429
(GRCh37/hg19 by Entrez Gene)
Size:
1,437 bases
Orientation:
Minus strand

chr18:51,105,993-51,107,429
(GRCh37/hg19 by Ensembl)
Size:
1,437 bases
Orientation:
Minus strand

Genomic View for LINC01917 Gene

Genes around LINC01917 on UCSC Golden Path with GeneCards custom track
LINC01917 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01917 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01917 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01917 Gene

Proteins for LINC01917 Gene

Post-translational modifications for LINC01917 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01917 Gene

Domains & Families for LINC01917 Gene

Gene Families for LINC01917 Gene

genes like me logo Genes that share domains with LINC01917: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01917 Gene

Function for LINC01917 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01917 Gene

Localization for LINC01917 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01917 Gene

Pathways & Interactions for LINC01917 Gene

PathCards logo

SuperPathways for LINC01917 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01917 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01917 Gene

Drugs & Compounds for LINC01917 Gene

No Compound Related Data Available

Transcripts for LINC01917 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01917 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055F1F0_9606 lncRNA 1037 3

RefSeq: NR_110800,

Ensembl: ENST00000565170 (view in UCSC) ,

LNCipedia: LINC01917:6,

URS0000510E56_9606 lncRNA 460 3

Ensembl: ENST00000582064 (view in UCSC) ,

LNCipedia: lnc-MBD2-2:1,

NONCODE: NONHSAT059326.2,

URS0000EEC5A6_9606 lncRNA 1090 1

Ensembl: ENST00000667801 (view in UCSC) ,

URS0000EECF1F_9606 lncRNA 1004 1

Ensembl: ENST00000652786 (view in UCSC) ,

URS0000EF0167_9606 lncRNA 962 1

Ensembl: ENST00000671412 (view in UCSC) ,

LINC01917 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01917 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01917 Gene

No ASD Table

Relevant External Links for LINC01917 Gene

GeneLoc Exon Structure for
LINC01917

Expression for LINC01917 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01917

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01917 Gene

Orthologs for LINC01917 Gene

Evolution for LINC01917 Gene

ENSEMBL:
Gene Tree for LINC01917 (if available)
TreeFam:
Gene Tree for LINC01917 (if available)

No data available for Orthologs for LINC01917 Gene

Paralogs for LINC01917 Gene

No data available for Paralogs for LINC01917 Gene

Variants for LINC01917 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01917 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01917 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01917

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01917 Gene

Disorders for LINC01917 Gene

Additional Disease Information for LINC01917

No disorders were found for LINC01917 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01917 Gene

Publications for LINC01917 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01917 Gene

Products for LINC01917 Gene

Sources for LINC01917 Gene