Aliases for LINC01916 Gene

Data sources for LINC01916 Gene:

RNA type for LINC01916 Gene

lncRNA

Aliases for LINC01916 Gene

External Ids for LINC01916 Gene

Previous GeneCards Identifiers for LINC01916 Gene

  • GC18U901244

Summaries for LINC01916 Gene

GeneCards Summary for LINC01916 Gene

LINC01916 (Long Intergenic Non-Protein Coding RNA 1916) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01916 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01916 Gene

Genomics for LINC01916 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01916 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J065423 Promoter 0.3 EPDnew 250.7 +0.1 123 0.1 LINC01916 LOC105372169 CDH7
GH18J065411 Enhancer 0.3 VISTA 0.4 -12.6 -12556 0.6 piR-38352-280 LINC01916 CDH7
GH18J065447 Enhancer 0.3 Ensembl 0.4 +23.4 23430 0.2 HLF LINC01916 LOC105372169 CDH7
GH18J065415 Enhancer 0.2 Ensembl 0.4 -8.5 -8471 0.8 LINC01916 piR-38352-280 CDH7
GH18J065401 Enhancer 0.2 Ensembl 0.4 -21.8 -21770 0.6 piR-38352-280 LINC01916 CDH7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01916 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01916 Gene

Latest Assembly
chr18:65,423,871-65,448,384
(GRCh38/hg38)
Size:
24,514 bases
Orientation:
Plus strand

Previous Assembly
chr18:63,091,249-63,114,748
(GRCh37/hg19 by Ensembl)
Size:
23,500 bases
Orientation:
Plus strand

Genomic View for LINC01916 Gene

Genes around LINC01916 on UCSC Golden Path with GeneCards custom track
LINC01916 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01916 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01916 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01916 Gene

Proteins for LINC01916 Gene

Post-translational modifications for LINC01916 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01916 Gene

Domains & Families for LINC01916 Gene

Gene Families for LINC01916 Gene

genes like me logo Genes that share domains with LINC01916: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01916 Gene

Function for LINC01916 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01916 Gene

Localization for LINC01916 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01916 Gene

Pathways & Interactions for LINC01916 Gene

PathCards logo

SuperPathways for LINC01916 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01916 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01916 Gene

Drugs & Compounds for LINC01916 Gene

No Compound Related Data Available

Transcripts for LINC01916 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01916 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEFDC6_9606 lncRNA 1269 1

Ensembl: ENST00000582028 (view in UCSC) ,

URS0000582FA0_9606 lncRNA 559 2

LNCipedia: LINC01916:3,

NONCODE: NONHSAT059699.2,

URS0001BCF20F_9606 lncRNA 1573 1

LncBook: HSALNT0252451,

URS0001BD3C87_9606 lncRNA 1439 1

LncBook: HSALNT0252452,

LINC01916 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01916 Gene

No ASD Table

Relevant External Links for LINC01916 Gene

GeneLoc Exon Structure for
LINC01916

No data available for mRNA/cDNA for LINC01916 Gene

Expression for LINC01916 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01916 Gene

Orthologs for LINC01916 Gene

Evolution for LINC01916 Gene

ENSEMBL:
Gene Tree for LINC01916 (if available)
TreeFam:
Gene Tree for LINC01916 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01916

No data available for Orthologs for LINC01916 Gene

Paralogs for LINC01916 Gene

No data available for Paralogs for LINC01916 Gene

Variants for LINC01916 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01916 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01916 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01916
Leiden Open Variation Database (LOVD)
LINC01916

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01916 Gene

Disorders for LINC01916 Gene

Additional Disease Information for LINC01916

Open Targets Platform
Open Targets Platform

No disorders were found for LINC01916 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01916 Gene

Publications for LINC01916 Gene

No publications were found for LINC01916 Gene.

No data available for Mastermind for LINC01916 Gene

Products for LINC01916 Gene

Sources for LINC01916 Gene