Aliases for LINC01915 Gene

Subcategory (RNA class) for LINC01915 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01915 Gene

  • Long Intergenic Non-Protein Coding RNA 1915 2 3 5
  • LINC01915 2 170
  • NONHSAG023570 94
  • HSALNG0120518 169
  • HSALNG0120513 169
  • NONHSAG023572 94
  • Lnc-HRH4-5 170

External Ids for LINC01915 Gene

Previous GeneCards Identifiers for LINC01915 Gene

  • GC18P024629

Summaries for LINC01915 Gene

GeneCards Summary for LINC01915 Gene

LINC01915 (Long Intergenic Non-Protein Coding RNA 1915) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01915 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01915 Gene

Genomics for LINC01915 Gene

GeneHancer (GH) Regulatory Elements for LINC01915 Gene

Promoters and enhancers for LINC01915 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J024536 Enhancer 0.5 ENCODE 750.6 +2.0 1967 0.8 ZNF501 ARNT OVOL3 WT1 FEZF1 ZNF843 PRDM6 LINC01915 ENSG00000266489
GH18J024535 Enhancer 0.2 ENCODE 750.6 +1.5 1461 0.2 LINC01915 ENSG00000266489
GH18J024655 Enhancer 1.2 VISTA FANTOM5 Ensembl ENCODE 7.8 +122.4 122380 2.9 ZNF384 PKNOX1 FOS POLR2A ZFHX2 ZNF398 LINC01915 RF00017-2638 piR-46847-107
GH18J024659 Enhancer 0.4 ENCODE CraniofacialAtlas 8.3 +126.0 125988 1.8 POLR2A LINC01915 RF00017-2638 piR-46847-107
GH18J024730 Enhancer 0.6 Ensembl ENCODE 6 +197.0 197018 1.7 RCOR1 JUND BATF RF00017-2639 LINC01915 ENSG00000266573 LOC105372028
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01915 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01915 Gene

Genomic Locations for LINC01915 Gene
chr18:24,534,551-24,708,542
(GRCh38/hg38)
Size:
173,992 bases
Orientation:
Plus strand
chr18:22,208,146-22,242,162
(GRCh37/hg19)
Size:
34,017 bases
Orientation:
Plus strand

Genomic View for LINC01915 Gene

Genes around LINC01915 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01915 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01915 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01915 Gene

Proteins for LINC01915 Gene

Post-translational modifications for LINC01915 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01915 Gene

Domains & Families for LINC01915 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01915 Gene

Function for LINC01915 Gene

Phenotypes From GWAS Catalog for LINC01915 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01915 Gene

Localization for LINC01915 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01915 Gene

Pathways & Interactions for LINC01915 Gene

PathCards logo

SuperPathways for LINC01915 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01915 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01915 Gene

Drugs & Compounds for LINC01915 Gene

No Compound Related Data Available

Transcripts for LINC01915 Gene

mRNA/cDNA for LINC01915 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(2) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01915 Gene

No ASD Table

Relevant External Links for LINC01915 Gene

GeneLoc Exon Structure for
LINC01915
ECgene alternative splicing isoforms for
LINC01915

Expression for LINC01915 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01915 Gene

Orthologs for LINC01915 Gene

Evolution for LINC01915 Gene

ENSEMBL:
Gene Tree for LINC01915 (if available)
TreeFam:
Gene Tree for LINC01915 (if available)

No data available for Orthologs for LINC01915 Gene

Paralogs for LINC01915 Gene

No data available for Paralogs for LINC01915 Gene

Variants for LINC01915 Gene

Sequence variations from dbSNP and Humsavar for LINC01915 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000045168 -- 24,652,828(+) A/G intron_variant
rs1000058856 -- 24,655,687(+) AAAAAAA/AAAAAAAA intron_variant
rs1000180241 -- 24,650,260(+) A/G intron_variant
rs1000253862 -- 24,649,970(+) A/T intron_variant
rs1000267816 -- 24,659,105(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01915 Gene

Variant ID Type Subtype PubMed ID
nsv527893 CNV loss 19592680
nsv833598 CNV gain 17160897

Additional Variant Information for LINC01915 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01915

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01915 Gene

Disorders for LINC01915 Gene

Additional Disease Information for LINC01915

No disorders were found for LINC01915 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01915 Gene

Publications for LINC01915 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LINC01915 Gene

Sources for LINC01915 Gene