Aliases for LINC01909 Gene

Subcategory (RNA class) for LINC01909 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01909 Gene

  • Long Intergenic Non-Protein Coding RNA 1909 2 3 5
  • LINC01909 2 5 165
  • NONHSAG024116.2 91
  • HSALNG0122285 164

External Ids for LINC01909 Gene

Summaries for LINC01909 Gene

GeneCards Summary for LINC01909 Gene

LINC01909 (Long Intergenic Non-Protein Coding RNA 1909) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01909 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01909 Gene

Genomics for LINC01909 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01909 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J070331 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 607.2 -0.2 -236 8.2 GATAD2A ATF7 TFE3 NFKBIZ RCOR2 JUND FOXA1 PHF21A RBFOX2 PKNOX1 LINC01909 LIVAR piR-50444-205 lnc-DOK6-3 SOCS6
GH18J070285 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 15.2 -45.7 -45695 8.5 GATAD2A PRDM10 ZNF629 TFE3 RFX1 ZNF692 POLR2A BACH1 JUND LARP7 SOCS6 HSALNG0122282 LINC01909 RF00017-2701
GH18J070294 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 6.3 -39.3 -39301 2.8 GATAD2A ZNF512 IKZF1 PRDM1 RXRB IRF2 SP1 HDAC1 GABPA PBX2 RTTN LINC01909 SOCS6 RF00017-2701
GH18J070355 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.7 +22.5 22533 3.9 PRDM10 ZNF629 FOXA1 PRDM1 ZNF600 CEBPB SP1 JUND ATF3 ZEB1 LINC01909 piR-57133-282 piR-50437-317 SOCS6
GH18J070309 Enhancer 0.8 Ensembl dbSUPER 7.1 -22.6 -22636 6.6 GATAD2A FOXA1 RXRB CEBPA SOX13 FOXA2 TEAD1 CREM FOXP1 SAP130 LINC01909 SOCS6 RF00017-2701 lnc-DOK6-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01909 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01909 Gene

Genomic Locations for LINC01909 Gene
chr18:70,335,337-70,352,459
(GRCh38/hg38)
Size:
17,123 bases
Orientation:
Plus strand

Genomic View for LINC01909 Gene

Genes around LINC01909 on UCSC Golden Path with GeneCards custom track
LINC01909 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01909 Gene

Proteins for LINC01909 Gene

Post-translational modifications for LINC01909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01909 Gene

Domains & Families for LINC01909 Gene

Gene Families for LINC01909 Gene

genes like me logo Genes that share domains with LINC01909: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01909 Gene

Function for LINC01909 Gene

Phenotypes From GWAS Catalog for LINC01909 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01909 Gene

Localization for LINC01909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01909 Gene

Pathways & Interactions for LINC01909 Gene

PathCards logo

SuperPathways for LINC01909 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01909 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01909 Gene

Drugs & Compounds for LINC01909 Gene

No Compound Related Data Available

Transcripts for LINC01909 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01909 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E2CC5_9606 lncRNA 815 4

HGNC: 52728,

RefSeq: NR_126336,

Ensembl: ENST00000584919 (view in UCSC) ,

LNCipedia: LINC01909:12,

URS00007C428F_9606 lncRNA 423 4

Ensembl: ENST00000583247 (view in UCSC) ,

LncBook: HSALNT0252729,

LNCipedia: LINC01909:14,

NONCODE: NONHSAT059772.2,

URS00008B5D4C_9606 lncRNA 888 3

LncBook: HSALNT0252724,

LNCipedia: LINC01909:11,

NONCODE: NONHSAT177950.1,

URS00008BED1A_9606 lncRNA 613 3

LncBook: HSALNT0252733,

LNCipedia: LINC01909:15,

NONCODE: NONHSAT059774.2,

URS00008B56F7_9606 lncRNA 514 3

LncBook: HSALNT0252722,

LNCipedia: LINC01909:9,

NONCODE: NONHSAT059768.2,

LINC01909 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01909 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01909 Gene

No ASD Table

Relevant External Links for LINC01909 Gene

GeneLoc Exon Structure for
LINC01909

Expression for LINC01909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01909 Gene

Orthologs for LINC01909 Gene

Evolution for LINC01909 Gene

ENSEMBL:
Gene Tree for LINC01909 (if available)
TreeFam:
Gene Tree for LINC01909 (if available)

No data available for Orthologs for LINC01909 Gene

Paralogs for LINC01909 Gene

No data available for Paralogs for LINC01909 Gene

Variants for LINC01909 Gene

Additional dbSNP identifiers (rs#s) for LINC01909 Gene

Additional Variant Information for LINC01909 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01909

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01909 Gene

Disorders for LINC01909 Gene

No disorders were found for LINC01909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01909 Gene

Publications for LINC01909 Gene

No publications were found for LINC01909 Gene.

No data available for Mastermind for LINC01909 Gene

Products for LINC01909 Gene

Sources for LINC01909 Gene