Aliases for LINC01908 Gene

Subcategory (RNA class) for LINC01908 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01908 Gene

  • Long Intergenic Non-Protein Coding RNA 1908 2 3 5
  • LINC01908 2 170
  • NONHSAG023607 94
  • HSALNG0120596 169

External Ids for LINC01908 Gene

Summaries for LINC01908 Gene

GeneCards Summary for LINC01908 Gene

LINC01908 (Long Intergenic Non-Protein Coding RNA 1908) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01908 Gene

Additional gene information for LINC01908 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01908 Gene

Genomics for LINC01908 Gene

GeneHancer (GH) Regulatory Elements for LINC01908 Gene

Promoters and enhancers for LINC01908 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J027223 Enhancer 0.5 Ensembl ENCODE 750.6 -0.5 -540 1.6 ZIC2 PRDM10 LINC01908 piR-38135 CHST9
GH18J027227 Enhancer 0.6 Ensembl ENCODE 0.6 +2.5 2517 2.5 SP1 HNF4A RXRA piR-38135 CHST9 LINC01908 piR-58557-040
GH18J027232 Enhancer 0.7 Ensembl ENCODE 0.4 +8.3 8262 0.4 FOXA1 PPARG RXRB FOXA2 HNF4A RXRA MAX piR-30876-045 piR-32559-189 CHST9 LINC01908 NONHSAG023607.2-001
GH18J027197 Enhancer 0.5 ENCODE 0.3 -26.5 -26507 1 CEBPA GATAD2A SOX13 FOXA2 CEBPG NFIL3 BCL6 SOX5 CHST9 LINC01908
GH18J027231 Enhancer 0.3 Ensembl ENCODE 0.4 +7.2 7214 1.6 piR-30876-045 piR-32559-189 piR-38716-065 piR-58557-040 CHST9 LINC01908
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01908 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01908 Gene

Genomic Locations for LINC01908 Gene
chr18:27,224,717-27,296,740
(GRCh38/hg38)
Size:
72,024 bases
Orientation:
Plus strand
chr18:24,805,706-24,827,152
(GRCh37/hg19)
Size:
21,447 bases
Orientation:
Plus strand

Genomic View for LINC01908 Gene

Genes around LINC01908 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01908 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01908 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01908 Gene

Proteins for LINC01908 Gene

Post-translational modifications for LINC01908 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01908 Gene

Domains & Families for LINC01908 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01908 Gene

Function for LINC01908 Gene

Phenotypes From GWAS Catalog for LINC01908 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01908 Gene

Localization for LINC01908 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01908 Gene

Pathways & Interactions for LINC01908 Gene

PathCards logo

SuperPathways for LINC01908 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01908 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01908 Gene

Drugs & Compounds for LINC01908 Gene

No Compound Related Data Available

Transcripts for LINC01908 Gene

mRNA/cDNA for LINC01908 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) LncBook transcripts :
(1) LNCipedia transcripts :
(4) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01908 Gene

No ASD Table

Relevant External Links for LINC01908 Gene

GeneLoc Exon Structure for
LINC01908
ECgene alternative splicing isoforms for
LINC01908

Expression for LINC01908 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01908 Gene

Orthologs for LINC01908 Gene

Evolution for LINC01908 Gene

ENSEMBL:
Gene Tree for LINC01908 (if available)
TreeFam:
Gene Tree for LINC01908 (if available)

No data available for Orthologs for LINC01908 Gene

Paralogs for LINC01908 Gene

No data available for Paralogs for LINC01908 Gene

Variants for LINC01908 Gene

Sequence variations from dbSNP and Humsavar for LINC01908 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000020660 -- 27,227,388(+) C/T intron_variant
rs1000042808 -- 27,271,357(+) C/T intron_variant
rs1000053159 -- 27,227,515(+) C/T intron_variant
rs1000194568 -- 27,271,022(+) T/C intron_variant
rs1000339224 -- 27,259,673(+) G/A intron_variant

Additional Variant Information for LINC01908 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01908

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01908 Gene

Disorders for LINC01908 Gene

No disorders were found for LINC01908 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01908 Gene

Publications for LINC01908 Gene

No publications were found for LINC01908 Gene.

Products for LINC01908 Gene

Sources for LINC01908 Gene