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Aliases for LINC01907 Gene

Subcategory (RNA class) for LINC01907 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01907 Gene

  • Long Intergenic Non-Protein Coding RNA 1907 2 3 5

External Ids for LINC01907 Gene

Summaries for LINC01907 Gene

GeneCards Summary for LINC01907 Gene

LINC01907 (Long Intergenic Non-Protein Coding RNA 1907) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01907 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01907 Gene

Genomics for LINC01907 Gene

GeneHancer (GH) Regulatory Elements for LINC01907 Gene

Promoters and enhancers for LINC01907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J230700 Enhancer 0.5 Ensembl 600.7 +0.0 28 3.4 MAFK ZNF316 NFE2 MAFG ZNF366 NFE2L2 LINC01907 GC02P230588
GH02J230774 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.9 -75.9 -75871 13.2 CBFA2T2 ZNF148 CREM SMARCA4 IKZF1 GMEB1 DPF2 RFX1 IKZF2 ZNF7 CAB39 RNU6-268P RNU6-451P LINC01907 GC02P230779
GH02J230750 Enhancer 0.8 Ensembl ENCODE 5 -49.6 -49572 5.4 ZBTB33 PKNOX1 SCRT2 SOX6 MAFK ZNF766 RUNX3 BATF BCL6 ATF2 CAB39 LINC01907 GC02P230753 RNU6-268P BANF1P3
GH02J230723 Enhancer 0.2 ENCODE 5.9 -23.0 -22977 0.6 BANF1P3 LINC01907 CAB39
GH02J230690 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +9.5 9490 2.1 SP7 KLF14 PRDM1 ZNF547 CREB1 ZNF600 PRDM10 ZSCAN4 ZNF639 ATF7 CAB39 TEX44 LINC01907 GC02P230588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01907 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01907 Gene

Genomic Locations for LINC01907 Gene
chr2:230,690,921-230,700,529
(GRCh38/hg38)
Size:
9,609 bases
Orientation:
Minus strand
chr2:231,555,636-231,565,244
(GRCh37/hg19)
Size:
9,609 bases
Orientation:
Minus strand

Genomic View for LINC01907 Gene

Genes around LINC01907 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01907 Gene

Proteins for LINC01907 Gene

Post-translational modifications for LINC01907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01907 Gene

Domains & Families for LINC01907 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01907 Gene

Function for LINC01907 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01907 Gene

Localization for LINC01907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01907 Gene

Pathways & Interactions for LINC01907 Gene

PathCards logo

SuperPathways for LINC01907 Gene

No Data Available

Interacting Proteins for LINC01907 Gene

Gene Ontology (GO) - Biological Process for LINC01907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01907 Gene

Drugs & Compounds for LINC01907 Gene

No Compound Related Data Available

Transcripts for LINC01907 Gene

mRNA/cDNA for LINC01907 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01907 Gene

No ASD Table

Relevant External Links for LINC01907 Gene

GeneLoc Exon Structure for
LINC01907
ECgene alternative splicing isoforms for
LINC01907

Expression for LINC01907 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01907 Gene

Orthologs for LINC01907 Gene

Evolution for LINC01907 Gene

ENSEMBL:
Gene Tree for LINC01907 (if available)
TreeFam:
Gene Tree for LINC01907 (if available)

No data available for Orthologs for LINC01907 Gene

Paralogs for LINC01907 Gene

No data available for Paralogs for LINC01907 Gene

Variants for LINC01907 Gene

Sequence variations from dbSNP and Humsavar for LINC01907 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000205109 -- 230,700,925(-) T/C upstream_transcript_variant
rs1000558357 -- 230,695,833(-) G/A intron_variant
rs1000626229 -- 230,694,666(-) C/G non_coding_transcript_variant
rs1000639828 -- 230,702,491(-) C/G upstream_transcript_variant
rs1000836546 -- 230,695,608(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01907 Gene

Variant ID Type Subtype PubMed ID
esv25277 CNV loss 19812545
esv2669415 CNV deletion 23128226
esv3594610 CNV loss 21293372
nsv3202 CNV deletion 18451855
nsv514124 CNV loss 21397061
nsv584675 CNV loss 21841781
nsv834565 CNV gain 17160897

Additional Variant Information for LINC01907 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01907

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01907 Gene

Disorders for LINC01907 Gene

Additional Disease Information for LINC01907

No disorders were found for LINC01907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01907 Gene

Publications for LINC01907 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LINC01907 Gene

Products for LINC01907 Gene

Sources for LINC01907 Gene

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