LINC01905 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1905

GC18P056043
GIFtS:
9
See more...

Aliases for LINC01905 Gene

Data sources for LINC01905 Gene:

Subcategory (RNA class) for LINC01905 Gene

lncRNA

Aliases for LINC01905 Gene

External Ids for LINC01905 Gene

Summaries for LINC01905 Gene

GeneCards Summary for LINC01905 Gene

LINC01905 (Long Intergenic Non-Protein Coding RNA 1905) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01905 Gene

  • Small nucleolar RNA SNORA73 family

Additional gene information for LINC01905 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01905 Gene

Genomics for LINC01905 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01905 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056038 Enhancer 0.8 UCNEbase Ensembl 0.4 +6.7 6671 0.6 RCOR1 GATA2 POLR2A CHD2 EP300 LINC01905 ENSG00000267399 LOC642484 TCF4 WDR7
GH18J056043 Enhancer 0.5 Ensembl ENCODE 0.4 +12.1 12077 0.6 FOXA2 ZNF7 LINC01905 ENSG00000267399 LOC642484 TCF4 WDR7
GH18J056112 Enhancer 0.8 Ensembl 0.2 +83.1 83070 5.4 BCL11A IRF4 EBF1 FOSL1 CBFB SPI1 BHLHE40 BATF STAT5A ZNF24 ENSG00000201816 LINC01539 ENSG00000267732 HSALNG0121713 LOC642484 LINC01905 TCF4 WDR7
GH18J056082 Enhancer 0.6 Ensembl ENCODE 0.2 +51.6 51571 4 CTCF RAD21 NR2F2 LOC642484 HSALNG0121713 ENSG00000267732 LINC01539 LINC01905 TCF4 WDR7
GH18J056085 Enhancer 0.4 Ensembl ENCODE 0.2 +53.9 53902 0.5 CEBPB HSALNG0121713 ENSG00000267732 LINC01539 LINC01905 LOC642484 TCF4 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01905 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01905 Gene

Latest Assembly
chr18:56,031,830-56,135,295
(GRCh38/hg38)
Size:
103,466 bases
Orientation:
Plus strand

Previous Assembly
chr18:53,709,509-53,763,546
(GRCh37/hg19 by Entrez Gene)
Size:
54,038 bases
Orientation:
Plus strand

chr18:53,709,366-53,763,550
(GRCh37/hg19 by Ensembl)
Size:
54,185 bases
Orientation:
Plus strand

Genomic View for LINC01905 Gene

Genes around LINC01905 on UCSC Golden Path with GeneCards custom track
LINC01905 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01905 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01905 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01905 Gene

Proteins for LINC01905 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01905 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01905 Gene

Domains & Families for LINC01905 Gene

Gene Families for LINC01905 Gene

HGNC:
genes like me logo Genes that share domains with LINC01905: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01905 Gene

Function for LINC01905 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01905 Gene

Localization for LINC01905 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01905 Gene

Pathways & Interactions for LINC01905 Gene

PathCards logo

SuperPathways for LINC01905 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01905 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01905 Gene

Drugs & Compounds for LINC01905 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC01905 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01905 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000031E869_9606 lncRNA 624 4

Ensembl: ENST00000589450 (view in UCSC) ,

LncBook: HSALNT0251589,

LNCipedia: LINC01905:13,

NONCODE: NONHSAT059396.2,

URS00003B19CD_9606 lncRNA 524 4

Ensembl: ENST00000593180 (view in UCSC) ,

LncBook: HSALNT0251620,

LNCipedia: LINC01905:17,

NONCODE: NONHSAT059411.2,

URS00000D2121_9606 lncRNA 452 4

Ensembl: ENST00000585684 (view in UCSC) ,

LncBook: HSALNT0251586,

LNCipedia: LINC01905:11,

NONCODE: NONHSAT059394.2,

URS000060D30B_9606 lncRNA 433 3

Ensembl: ENST00000592045 (view in UCSC) ,

LNCipedia: LINC01905:12,

NONCODE: NONHSAT059395.2,

URS0000EEFBA4_9606 lncRNA 1225 1

Ensembl: ENST00000660935 (view in UCSC) ,

LINC01905 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01905 Gene

No ASD Table

Relevant External Links for LINC01905 Gene

GeneLoc Exon Structure for
LINC01905

No data available for mRNA/cDNA for LINC01905 Gene

Expression for LINC01905 Gene

Products:

  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01905

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01905 Gene

Orthologs for LINC01905 Gene

Evolution for LINC01905 Gene

ENSEMBL:
Gene Tree for LINC01905 (if available)
TreeFam:
Gene Tree for LINC01905 (if available)

No data available for Orthologs for LINC01905 Gene

Paralogs for LINC01905 Gene

No data available for Paralogs for LINC01905 Gene

Variants for LINC01905 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01905 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01905 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01905

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01905 Gene

Disorders for LINC01905 Gene

Additional Disease Information for LINC01905

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01905 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01905 Gene

Publications for LINC01905 Gene

No publications were found for LINC01905 Gene.

No data available for Mastermind for LINC01905 Gene

Products for LINC01905 Gene

Sources for LINC01905 Gene