LINC01905 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1905

GC18P056043
GIFtS:
8

Aliases for LINC01905 Gene

Subcategory (RNA class) for LINC01905 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01905 Gene

  • Long Intergenic Non-Protein Coding RNA 1905 2 3 5
  • LINC01905 2 170
  • HSALNG0121708 169
  • NONHSAG023920 94

External Ids for LINC01905 Gene

Summaries for LINC01905 Gene

GeneCards Summary for LINC01905 Gene

LINC01905 (Long Intergenic Non-Protein Coding RNA 1905) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01905 Gene

  • Small nucleolar RNA SNORA73 family

Additional gene information for LINC01905 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01905 Gene

Genomics for LINC01905 Gene

GeneHancer (GH) Regulatory Elements for LINC01905 Gene

Promoters and enhancers for LINC01905 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056028 Enhancer 0.6 Ensembl 0.6 -3.2 -3229 0.4 FOXA1 RAD21 SP1 FOXA2 JUND ATF3 YY1 ZBTB33 HNF4A REST LOC642484 ENSG00000206129 ENSG00000287248 LINC01905 LOC107985164
GH18J056038 Enhancer 0.7 UCNEbase Ensembl 0.4 +6.8 6770 0.8 POLR2A RCOR1 LINC01905 ENSG00000267399 ENSG00000206129
GH18J056043 Enhancer 0.5 Ensembl ENCODE 0.4 +12.0 11971 1.2 ZNF7 FOXA2 LINC01905 ENSG00000267399 ENSG00000206129
GH18J056082 Enhancer 0.6 Ensembl ENCODE 0.2 +51.9 51868 4.6 RAD21 NR2F2 JUN CTCF ENSG00000206129 ENSG00000201816 LINC01539 LINC01905
GH18J056112 Enhancer 0.7 Ensembl 0.2 +83.0 82971 5.6 ZNF24 JUND ETV6 RELA CREM ZBED1 IKZF1 BACH1 IKZF2 PKNOX1 ENSG00000201816 LINC01539 ENSG00000206129 LINC01905
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01905 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01905 Gene

Genomic Locations for LINC01905 Gene
chr18:56,031,830-56,135,295
(GRCh38/hg38)
Size:
103,466 bases
Orientation:
Plus strand

Genomic View for LINC01905 Gene

Genes around LINC01905 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01905 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01905 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01905 Gene

Proteins for LINC01905 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01905 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01905 Gene

Domains & Families for LINC01905 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01905 Gene

Function for LINC01905 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01905 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01905 Gene

Localization for LINC01905 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01905 Gene

Pathways & Interactions for LINC01905 Gene

PathCards logo

SuperPathways for LINC01905 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01905 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01905 Gene

Drugs & Compounds for LINC01905 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01905 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01905 Gene

(2) REFSEQ mRNAs :
(46) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(7) LncBook transcripts :
(9) LNCipedia transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01905 Gene

No ASD Table

Relevant External Links for LINC01905 Gene

GeneLoc Exon Structure for
LINC01905
ECgene alternative splicing isoforms for
LINC01905

Expression for LINC01905 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01905 Gene

Orthologs for LINC01905 Gene

Evolution for LINC01905 Gene

ENSEMBL:
Gene Tree for LINC01905 (if available)
TreeFam:
Gene Tree for LINC01905 (if available)

No data available for Orthologs for LINC01905 Gene

Paralogs for LINC01905 Gene

No data available for Paralogs for LINC01905 Gene

Variants for LINC01905 Gene

Sequence variations from dbSNP and Humsavar for LINC01905 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000028242 -- 56,083,754(+) C/T intron_variant
rs1000042862 -- 56,095,825(+) T/C intron_variant
rs1000043505 -- 56,051,182(+) A/G intron_variant
rs1000063709 -- 56,066,196(+) TTTTTTTT/TTTTTTT/TTTTTTTTT intron_variant
rs1000165960 -- 56,069,702(+) A/G intron_variant

Additional Variant Information for LINC01905 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01905

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01905 Gene

Disorders for LINC01905 Gene

Additional Disease Information for LINC01905

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01905 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01905 Gene

Publications for LINC01905 Gene

No publications were found for LINC01905 Gene.

No data available for External Links for LINC01905 Gene

Products for LINC01905 Gene

Sources for LINC01905 Gene