Aliases for LINC01901 Gene

Data sources for LINC01901 Gene:

RNA type for LINC01901 Gene

lncRNA

Aliases for LINC01901 Gene

External Ids for LINC01901 Gene

Summaries for LINC01901 Gene

GeneCards Summary for LINC01901 Gene

LINC01901 (Long Intergenic Non-Protein Coding RNA 1901) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01901 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01901 Gene

Genomics for LINC01901 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01901 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J039923 Promoter 0.8 EPDnew Ensembl 250.7 +0.4 439 1.2 FOXA2 LINC01901 piR-57176-310 HSALNG0121096-001 LINC01902
GH18J039840 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 0.2 +83.3 83338 3 ZNF654 ZNF600 ZIC2 FEZF1 ZNF341 KLF7 CTCF BHLHE40 SMAD4 YY1 HSALNG0121096-001 LINC01902 HSALNG0121095 LINC01901
GH18J039918 Enhancer 0.5 VISTA UCNEbase 0.4 +5.7 5687 0.9 LINC01901 HSALNG0121096-001 LINC01902
GH18J039914 Enhancer 0.2 Ensembl 0.4 +10.7 10739 0.2 LINC01901 HSALNG0121096-001 LINC01902
GH18J039885 Enhancer 0.2 Ensembl 0.3 +38.6 38639 0.4 LINC01901 HSALNG0121096-001 LINC01902
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01901 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01901 Gene

Latest Assembly
chr18:39,841,173-39,924,840
(GRCh38/hg38)
Size:
83,668 bases
Orientation:
Minus strand

Previous Assembly
chr18:37,421,138-37,504,804
(GRCh37/hg19 by Ensembl)
Size:
83,667 bases
Orientation:
Minus strand

Genomic View for LINC01901 Gene

Genes around LINC01901 on UCSC Golden Path with GeneCards custom track
LINC01901 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01901 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01901 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01901 Gene

Proteins for LINC01901 Gene

Post-translational modifications for LINC01901 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01901 Gene

Domains & Families for LINC01901 Gene

Gene Families for LINC01901 Gene

genes like me logo Genes that share domains with LINC01901: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01901 Gene

Function for LINC01901 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01901 Gene

Localization for LINC01901 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01901 Gene

Pathways & Interactions for LINC01901 Gene

PathCards logo

SuperPathways for LINC01901 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01901 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01901 Gene

Drugs & Compounds for LINC01901 Gene

No Compound Related Data Available

Transcripts for LINC01901 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01901 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000006044C_9606 lncRNA 1115 3

Ensembl: ENST00000585822 (view in UCSC) ,

LNCipedia: LINC01901:4,

NONCODE: NONHSAT059037.2,

URS00008C0F59_9606 lncRNA 899 1

LNCipedia: LINC01901:5,

URS00009B6016_9606 lncRNA 896 1

NONCODE: NONHSAT178401.1,

LINC01901 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01901 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01901 Gene

No ASD Table

Relevant External Links for LINC01901 Gene

GeneLoc Exon Structure for
LINC01901

Expression for LINC01901 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01901 Gene

Orthologs for LINC01901 Gene

Evolution for LINC01901 Gene

ENSEMBL:
Gene Tree for LINC01901 (if available)
TreeFam:
Gene Tree for LINC01901 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01901

No data available for Orthologs for LINC01901 Gene

Paralogs for LINC01901 Gene

No data available for Paralogs for LINC01901 Gene

Variants for LINC01901 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01901 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01901 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01901
Leiden Open Variation Database (LOVD)
LINC01901

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01901 Gene

Disorders for LINC01901 Gene

Additional Disease Information for LINC01901

Open Targets Platform
Open Targets Platform

No disorders were found for LINC01901 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01901 Gene

Publications for LINC01901 Gene

No publications were found for LINC01901 Gene.

No data available for Mastermind for LINC01901 Gene

Products for LINC01901 Gene

Sources for LINC01901 Gene