LINC01898 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1898

GC18M075697
GIFtS:
8
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Aliases for LINC01898 Gene

Data sources for LINC01898 Gene:

Subcategory (RNA class) for LINC01898 Gene

lncRNA

Aliases for LINC01898 Gene

External Ids for LINC01898 Gene

Summaries for LINC01898 Gene

GeneCards Summary for LINC01898 Gene

LINC01898 (Long Intergenic Non-Protein Coding RNA 1898) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01898 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01898 Gene

Genomics for LINC01898 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01898 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J075712 Promoter 0.9 EPDnew 269.6 +0.5 454 0.1 ZNF395 YY1 EHMT2 DIDO1 TEAD4 ZNF584 ZNF639 CSDE1 ZC3H11A PTTG1 LINC01898 piR-56133-102 SMIM21 LOC105372204
GH18J075677 Enhancer 0.3 Ensembl ENCODE 9.2 +33.7 33741 2.4 LINC01898 piR-56133-102 SMIM21 LOC105372204
GH18J075694 Enhancer 0.2 Ensembl 11.9 +17.9 17850 0.4 LINC01898 piR-56133-102 SMIM21 LOC105372204
GH18J075665 Enhancer 0.2 Ensembl 0.3 +47.4 47350 0.2 piR-56133-102 LINC01898 SMIM21 LOC105372204
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01898 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01898 Gene

Latest Assembly
chr18:75,695,679-75,712,851
(GRCh38/hg38)
Size:
17,173 bases
Orientation:
Minus strand

Previous Assembly
chr18:73,408,038-73,424,358
(GRCh37/hg19 by Entrez Gene)
Size:
16,321 bases
Orientation:
Minus strand

chr18:73,408,034-73,424,340
(GRCh37/hg19 by Ensembl)
Size:
16,307 bases
Orientation:
Minus strand

Genomic View for LINC01898 Gene

Genes around LINC01898 on UCSC Golden Path with GeneCards custom track
LINC01898 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01898 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01898 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01898 Gene

Proteins for LINC01898 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01898 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01898 Gene

Domains & Families for LINC01898 Gene

Gene Families for LINC01898 Gene

HGNC:
genes like me logo Genes that share domains with LINC01898: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01898 Gene

Function for LINC01898 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01898 Gene

Localization for LINC01898 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01898 Gene

Pathways & Interactions for LINC01898 Gene

PathCards logo

SuperPathways for LINC01898 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01898 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01898 Gene

Drugs & Compounds for LINC01898 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC01898 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01898 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76CC3_9606 lncRNA 1919 2

RefSeq: NR_134646,

LNCipedia: LINC01898:2,

URS00000AC5C7_9606 lncRNA 1903 2

Ensembl: ENST00000564156 (view in UCSC) ,

LNCipedia: LINC01898:7,

URS0000EF7085_9606 lncRNA 2404 1

Ensembl: ENST00000662762 (view in UCSC) ,

URS0000EEF6B0_9606 lncRNA 1032 1

Ensembl: ENST00000662237 (view in UCSC) ,

URS00008B7CE7_9606 lncRNA 1906 2

LNCipedia: LINC01898:8,

NONCODE: NONHSAT059899.2,

LINC01898 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01898 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01898 Gene

No ASD Table

Relevant External Links for LINC01898 Gene

GeneLoc Exon Structure for
LINC01898

Expression for LINC01898 Gene

Products:

  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01898

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01898 Gene

Orthologs for LINC01898 Gene

Evolution for LINC01898 Gene

ENSEMBL:
Gene Tree for LINC01898 (if available)
TreeFam:
Gene Tree for LINC01898 (if available)

No data available for Orthologs for LINC01898 Gene

Paralogs for LINC01898 Gene

No data available for Paralogs for LINC01898 Gene

Variants for LINC01898 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01898 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01898 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01898

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01898 Gene

Disorders for LINC01898 Gene

Additional Disease Information for LINC01898

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01898 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01898 Gene

Publications for LINC01898 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01898 Gene

Products for LINC01898 Gene

Sources for LINC01898 Gene