Aliases for LINC01896 Gene

Subcategory (RNA class) for LINC01896 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01896 Gene

  • Long Intergenic Non-Protein Coding RNA 1896 2 3 5
  • LINC01896 2 5 165
  • NONHSAG024232.2 91
  • HSALNG0122724 164

External Ids for LINC01896 Gene

Additional External Ids for LINC01896 Gene

Summaries for LINC01896 Gene

GeneCards Summary for LINC01896 Gene

LINC01896 (Long Intergenic Non-Protein Coding RNA 1896) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01896 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01896 Gene

Genomics for LINC01896 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01896 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J078978 Promoter/Enhancer 1.6 UCNEbase EPDnew Ensembl ENCODE 600.7 -1.6 -1599 6.4 TEAD4 POLR2A EZH2 ZBTB20 YY1 ZNF335 ZNF398 TAF1 NANOG HLF LINC01896 SALL3 HSALNG0122726 ATP9B
GH18J078977 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 600.7 +2.0 1961 0.3 EZH2 LINC01896 SALL3 RF00994-452
GH18J078975 Enhancer 0.9 UCNEbase FANTOM5 Ensembl 0.4 +5.7 5666 1.9 POLR2A EZH2 ETS1 POU5F1 LINC01896 SALL3 RF00994-452
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01896 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01896 Gene

Genomic Locations for LINC01896 Gene
chr18:78,976,555-78,980,002
(GRCh38/hg38)
Size:
3,448 bases
Orientation:
Minus strand
chr18:76,736,555-76,739,074
(GRCh37/hg19)
Size:
2,520 bases
Orientation:
Minus strand

Genomic View for LINC01896 Gene

Genes around LINC01896 on UCSC Golden Path with GeneCards custom track
LINC01896 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01896 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01896 Gene

Proteins for LINC01896 Gene

Post-translational modifications for LINC01896 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01896 Gene

Domains & Families for LINC01896 Gene

Gene Families for LINC01896 Gene

genes like me logo Genes that share domains with LINC01896: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01896 Gene

Function for LINC01896 Gene

Phenotypes From GWAS Catalog for LINC01896 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01896 Gene

Localization for LINC01896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01896 Gene

Pathways & Interactions for LINC01896 Gene

PathCards logo

SuperPathways for LINC01896 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01896 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01896 Gene

Drugs & Compounds for LINC01896 Gene

No Compound Related Data Available

Transcripts for LINC01896 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01896 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000021B24D_9606 lncRNA 1256 4

HGNC: 52715,

Ensembl: ENST00000575722 (view in UCSC) , ENST00000632155 (view in UCSC) ,

LNCipedia: LINC01896:38,

NONCODE: NONHSAT060017.2,

URS00005CDF49_9606 lncRNA 423 3

Ensembl: ENST00000573860 (view in UCSC) , ENST00000576208 (view in UCSC) , ENST00000632926 (view in UCSC) ,

LNCipedia: LINC01896:32,

NONCODE: NONHSAT060024.2,

URS00002E6B6D_9606 lncRNA 471 2

Ensembl: ENST00000572007 (view in UCSC) , ENST00000576780 (view in UCSC) , ENST00000631836 (view in UCSC) ,

LNCipedia: LINC01896:45,

URS000023BCFB_9606 lncRNA 393 2

Ensembl: ENST00000583511 (view in UCSC) , ENST00000633256 (view in UCSC) ,

LNCipedia: LINC01896:39,

URS00008B57E6_9606 lncRNA 2245 3

LncBook: HSALNT0253732,

LNCipedia: LINC01896:31,

NONCODE: NONHSAT060019.2,

LINC01896 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01896 Gene

No ASD Table

Relevant External Links for LINC01896 Gene

GeneLoc Exon Structure for
LINC01896

No data available for mRNA/cDNA for LINC01896 Gene

Expression for LINC01896 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01896

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01896 Gene

Orthologs for LINC01896 Gene

Evolution for LINC01896 Gene

ENSEMBL:
Gene Tree for LINC01896 (if available)
TreeFam:
Gene Tree for LINC01896 (if available)

No data available for Orthologs for LINC01896 Gene

Paralogs for LINC01896 Gene

No data available for Paralogs for LINC01896 Gene

Variants for LINC01896 Gene

Additional dbSNP identifiers (rs#s) for LINC01896 Gene

Additional Variant Information for LINC01896 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01896

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01896 Gene

Disorders for LINC01896 Gene

Additional Disease Information for LINC01896

No disorders were found for LINC01896 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01896 Gene

Publications for LINC01896 Gene

No publications were found for LINC01896 Gene.

Products for LINC01896 Gene

Sources for LINC01896 Gene