Aliases for LINC01895 Gene

Subcategory (RNA class) for LINC01895 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01895 Gene

  • Long Intergenic Non-Protein Coding RNA 1895 2 3 5
  • LINC01895 2 5 165
  • NONHSAG023227.2 91
  • HSALNG0119696 164

External Ids for LINC01895 Gene

Summaries for LINC01895 Gene

GeneCards Summary for LINC01895 Gene

LINC01895 (Long Intergenic Non-Protein Coding RNA 1895) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01895 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01895 Gene

Genomics for LINC01895 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01895 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J003383 Enhancer 1.2 FANTOM5 Ensembl ENCODE 600.7 -0.9 -851 3 PKNOX1 SP1 SOX6 MGA KLF7 ZXDB ESR1 EZH2 NFE2 FOXK2 LINC01895 lnc-TGIF1-5 TGIF1 MYL12B
GH18J003380 Enhancer 0.8 Ensembl ENCODE 0.7 +3.0 3005 1.5 IKZF1 CTCF CEBPB ARID3A SP1 EGR1 JUND EP300 FOSL2 SIN3A LINC01895 RPL31P59 TGIF1 MYL12B
GH18J003340 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 +43.0 42975 1.3 CREB1 PRDM10 ZNF629 LEF1 IKZF1 JUND PKNOX1 MTA1 HDAC1 SOX6 EMILIN2 TGIF1 HSALNG0119697 piR-39326 LINC01895 MYL12B
GH18J003367 Enhancer 0.7 Ensembl ENCODE 0.4 +15.3 15266 2.3 ZNF512 ZNF766 YY1 ZBTB33 JUND ZNF366 HNF4A RXRA ATF3 EGR1 METTL4 piR-39326 lnc-DLGAP1-7 LINC01895 TGIF1 MYL12B
GH18J003359 Enhancer 0.7 Ensembl ENCODE 0.4 +23.2 23231 1.4 SOX13 TFAP4 MBD1 ZBTB33 XRCC5 PPARG SP5 piR-39326 RPL21P127 TGIF1 LINC01895 HSALNG0119697 MYL12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01895 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01895 Gene

Genomic Locations for LINC01895 Gene
chr18:3,331,561-3,383,532
(GRCh38/hg38)
Size:
51,972 bases
Orientation:
Minus strand
chr18:3,347,774-3,350,557
(GRCh37/hg19)
Size:
2,784 bases
Orientation:
Minus strand

Genomic View for LINC01895 Gene

Genes around LINC01895 on UCSC Golden Path with GeneCards custom track
LINC01895 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01895 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01895 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01895 Gene

Proteins for LINC01895 Gene

Post-translational modifications for LINC01895 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01895 Gene

Domains & Families for LINC01895 Gene

Gene Families for LINC01895 Gene

genes like me logo Genes that share domains with LINC01895: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01895 Gene

Function for LINC01895 Gene

Phenotypes From GWAS Catalog for LINC01895 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01895 Gene

Localization for LINC01895 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01895 Gene

Pathways & Interactions for LINC01895 Gene

PathCards logo

SuperPathways for LINC01895 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01895 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01895 Gene

Drugs & Compounds for LINC01895 Gene

No Compound Related Data Available

Transcripts for LINC01895 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01895 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC445E_9606 lncRNA 477 2

HGNC: 52714,

RefSeq: NR_146506,

URS0000EEEA0C_9606 lncRNA 1043 1

Ensembl: ENST00000664193 (view in UCSC) ,

URS0000EEF886_9606 lncRNA 955 1

Ensembl: ENST00000662880 (view in UCSC) ,

URS0000EF1B2F_9606 lncRNA 892 1

Ensembl: ENST00000664706 (view in UCSC) ,

URS0000EEBFB7_9606 lncRNA 850 1

Ensembl: ENST00000669368 (view in UCSC) ,

LINC01895 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01895 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01895 Gene

No ASD Table

Relevant External Links for LINC01895 Gene

GeneLoc Exon Structure for
LINC01895

Expression for LINC01895 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01895 Gene

Orthologs for LINC01895 Gene

Evolution for LINC01895 Gene

ENSEMBL:
Gene Tree for LINC01895 (if available)
TreeFam:
Gene Tree for LINC01895 (if available)

No data available for Orthologs for LINC01895 Gene

Paralogs for LINC01895 Gene

No data available for Paralogs for LINC01895 Gene

Variants for LINC01895 Gene

Additional dbSNP identifiers (rs#s) for LINC01895 Gene

Additional Variant Information for LINC01895 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01895

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01895 Gene

Disorders for LINC01895 Gene

Additional Disease Information for LINC01895

No disorders were found for LINC01895 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01895 Gene

Publications for LINC01895 Gene

No publications were found for LINC01895 Gene.

No data available for Mastermind for LINC01895 Gene

Products for LINC01895 Gene

Sources for LINC01895 Gene