Aliases for LINC01894 Gene

Subcategory (RNA class) for LINC01894 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01894 Gene

  • Long Intergenic Non-Protein Coding RNA 1894 2 3 5
  • LINC01894 2 170
  • HSALNG0120527 169
  • NONHSAG023577 94

External Ids for LINC01894 Gene

Summaries for LINC01894 Gene

GeneCards Summary for LINC01894 Gene

LINC01894 (Long Intergenic Non-Protein Coding RNA 1894) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01894 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01894 Gene

Genomics for LINC01894 Gene

GeneHancer (GH) Regulatory Elements for LINC01894 Gene

Promoters and enhancers for LINC01894 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J024984 Promoter/Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 750.6 -0.2 -209 7.5 ZNF512 ZNF366 LINC01894 ENSG00000264924 lnc-ZNF521-2 ENSG00000266573
GH18J024983 Enhancer 0.4 ENCODE 5.5 +4.2 4205 0.7 POU5F1 SP1 NANOG LINC01894 lnc-ZNF521-2 lnc-HRH4-15 ENSG00000266573
GH18J024993 Enhancer 0.3 Ensembl 5.4 -5.7 -5722 1 USF1 LINC01894 lnc-ZNF521-2
GH18J024964 Enhancer 0.7 Ensembl ENCODE 0.3 +23.5 23478 1.4 PKNOX1 PRDM10 SOX6 SCRT2 CTBP1 SCRT1 KLF1 LINC01894 lnc-HRH4-15 lnc-ZNF521-2 ENSG00000266573
GH18J024995 Enhancer 0.5 Ensembl ENCODE 0.4 -7.0 -7025 0.8 NFE2 MAFK lnc-ZNF521-2 LINC01894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01894 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01894 Gene

Genomic Locations for LINC01894 Gene
chr18:24,923,871-24,987,979
(GRCh38/hg38)
Size:
64,109 bases
Orientation:
Minus strand
chr18:22,513,451-22,567,646
(GRCh37/hg19)
Size:
54,196 bases
Orientation:
Minus strand

Genomic View for LINC01894 Gene

Genes around LINC01894 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01894 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01894 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01894 Gene

Proteins for LINC01894 Gene

Post-translational modifications for LINC01894 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01894 Gene

Domains & Families for LINC01894 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01894 Gene

Function for LINC01894 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01894 Gene

Localization for LINC01894 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01894 Gene

Pathways & Interactions for LINC01894 Gene

PathCards logo

SuperPathways for LINC01894 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01894 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01894 Gene

Drugs & Compounds for LINC01894 Gene

No Compound Related Data Available

Transcripts for LINC01894 Gene

mRNA/cDNA for LINC01894 Gene

(1) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(8) LNCipedia transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01894 Gene

No ASD Table

Relevant External Links for LINC01894 Gene

GeneLoc Exon Structure for
LINC01894
ECgene alternative splicing isoforms for
LINC01894

Expression for LINC01894 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01894 Gene

Orthologs for LINC01894 Gene

Evolution for LINC01894 Gene

ENSEMBL:
Gene Tree for LINC01894 (if available)
TreeFam:
Gene Tree for LINC01894 (if available)

No data available for Orthologs for LINC01894 Gene

Paralogs for LINC01894 Gene

No data available for Paralogs for LINC01894 Gene

Variants for LINC01894 Gene

Sequence variations from dbSNP and Humsavar for LINC01894 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000101852 -- 24,954,526(-) A/G intron_variant
rs1000113292 -- 24,989,367(-) C/T upstream_transcript_variant
rs1000148955 -- 24,941,197(-) A/G intron_variant
rs1000189498 -- 24,947,035(-) C/T intron_variant
rs1000262589 -- 24,947,561(-) A/C intron_variant

Additional Variant Information for LINC01894 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01894

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01894 Gene

Disorders for LINC01894 Gene

Additional Disease Information for LINC01894

No disorders were found for LINC01894 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01894 Gene

Publications for LINC01894 Gene

No publications were found for LINC01894 Gene.

No data available for External Links for LINC01894 Gene

Products for LINC01894 Gene

Sources for LINC01894 Gene