Aliases for LINC01888 Gene

Subcategory (RNA class) for LINC01888 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01888 Gene

  • Long Intergenic Non-Protein Coding RNA 1888 2 3 5
  • LINC01888 2 170
  • HSALNG0015714 169
  • NONHSAG028068 94

External Ids for LINC01888 Gene

Previous GeneCards Identifiers for LINC01888 Gene

  • GC02U904331

Summaries for LINC01888 Gene

GeneCards Summary for LINC01888 Gene

LINC01888 (Long Intergenic Non-Protein Coding RNA 1888) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01888 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01888 Gene

Genomics for LINC01888 Gene

GeneHancer (GH) Regulatory Elements for LINC01888 Gene

Promoters and enhancers for LINC01888 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J068831 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 750.6 +0.2 202 2 USF2 L3MBTL2 MAX DACH1 ZKSCAN8 ZNF148 SP1 CBFA2T2 BACH1 SP7 LINC01888 LINC01890
GH02J068834 Promoter/Enhancer 0.6 Ensembl dbSUPER 750.6 +1.9 1887 0.2 ADNP LINC01888 LINC01890
GH02J068761 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 -62.6 -62634 16.7 SMARCE1 MYC ETV6 ELF1 RELA L3MBTL2 CEBPB MAX TEAD4 ZKSCAN8 ARHGAP25 HSALNG0015710 FBXO48 APLF LINC01888 PLEK LOC105374790
GH02J068732 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 -93.8 -93820 12 MYC ETV6 POLR2A IKZF1 IKZF2 ATF7 PKNOX1 ELF1 RUNX3 E2F5 ARHGAP25 PLEK LINC01888 FBXO48 APLF RF00998-069 LOC105374790
GH02J068805 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 13.2 -22.5 -22513 9.4 SMARCE1 ZFX BACH1 ZSCAN21 SMARCA4 CEBPG TRIM24 DPF2 CAVIN1 REST PLEK ANTXR1 LINC01888 BMP10 PNO1 WDR92 ARHGAP25 LINC01890 FBXO48 APLF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01888 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01888 Gene

Genomic Locations for LINC01888 Gene
chr2:68,832,014-68,837,726
(GRCh38/hg38)
Size:
5,713 bases
Orientation:
Plus strand
chr2:69,059,176-69,064,856
(GRCh37/hg19)
Size:
5,681 bases
Orientation:
Plus strand

Genomic View for LINC01888 Gene

Genes around LINC01888 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01888 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01888 Gene

Proteins for LINC01888 Gene

Post-translational modifications for LINC01888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01888 Gene

Domains & Families for LINC01888 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01888 Gene

Function for LINC01888 Gene

Phenotypes From GWAS Catalog for LINC01888 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01888 Gene

Localization for LINC01888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01888 Gene

Pathways & Interactions for LINC01888 Gene

PathCards logo

SuperPathways for LINC01888 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01888 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01888 Gene

Drugs & Compounds for LINC01888 Gene

No Compound Related Data Available

Transcripts for LINC01888 Gene

mRNA/cDNA for LINC01888 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01888 Gene

No ASD Table

Relevant External Links for LINC01888 Gene

GeneLoc Exon Structure for
LINC01888
ECgene alternative splicing isoforms for
LINC01888

Expression for LINC01888 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01888 Gene

Orthologs for LINC01888 Gene

Evolution for LINC01888 Gene

ENSEMBL:
Gene Tree for LINC01888 (if available)
TreeFam:
Gene Tree for LINC01888 (if available)

No data available for Orthologs for LINC01888 Gene

Paralogs for LINC01888 Gene

No data available for Paralogs for LINC01888 Gene

Variants for LINC01888 Gene

Sequence variations from dbSNP and Humsavar for LINC01888 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000102187 -- 68,837,126(+) G/A/T intron_variant
rs1000410263 -- 68,837,386(+) C/G non_coding_transcript_variant
rs1002179572 -- 68,835,268(+) G/A intron_variant
rs1003449551 -- 68,833,625(+) A/G upstream_transcript_variant
rs1004121228 -- 68,834,468(+) G/C/T non_coding_transcript_variant

Additional Variant Information for LINC01888 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01888

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01888 Gene

Disorders for LINC01888 Gene

No disorders were found for LINC01888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01888 Gene

Publications for LINC01888 Gene

No publications were found for LINC01888 Gene.

No data available for External Links for LINC01888 Gene

Products for LINC01888 Gene

Sources for LINC01888 Gene